myRT

myRT report for GCA_008011815.1_ASM801181v1

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Seq: VOUU01000001.1 Serratia nematodiphila strain S8 NODE_4_length_578632_cov_79.381485, whole genome shotgun sequence (578632 bp)
Overview 1 RT 1: 485329-493165 bp 2 RT 2: 507738-512702 bp Neighborhood of RT #1 [485329, 493167] PRK10837 HTH_32 rve RVT-GII TnpB_IS66 RVT-UG4 FimA PRK15287 Neighborhood of RT #2 [507738, 512702] DoxX PRK10220 RVT-GII GIIM RVT-GII PHA02517 Feature: gene Location: 485329-486198 bp Feature: domain Description: PRK10837 Location: 485332-486193 bp Feature: domain Description: PRK1 0837 Location: 485332-4861 93 bp Feature: gene Location: 487370-487882 bp Feature: gene Location: 488014-489264 bp Feature: domain Description: HTH_32 Location: 488035-488209 bp Feature: domain Description: HTH_32 Location: 488035-488209 bp Feature: domain Description: rve Location: 488284-488626 bp Feature: domain Description: rve Location: 488284-488626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488812-489229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48881 2-489229 bp Feature: gene Location: 489537-489728 bp Feature: gene Location: 489725-490075 bp Feature: domain Description: TnpB_IS66 Location: 489752-490043 bp Feature: domain Description: TnpB_IS66 Location: 489752-490043 bp Feature: gene Location: 490199-491053 bp Feature: gene Location: 491087-492103 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 491465-491912 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 491 465-491 91 2 bp Feature: gene Location: 492096-492656 bp Feature: domain Description: FimA Location: 492138-492654 bp Feature: domain Description: FimA Location: 4921 38-492654 bp Feature: gene Location: 492667-493167 bp Feature: domain Description: PRK15287 Location: 492733-493165 bp Feature: domain Description: PRK1 5287 Location: 492733-4931 65 bp Feature: gene Location: 507738-508394 bp Feature: domain Description: DoxX Location: 507876-508386 bp Feature: domain Description: DoxX Location: 507876-508386 bp Feature: gene Location: 508960-509238 bp Feature: domain Description: PRK10220 Location: 508963-509236 bp Feature: domain Description: PRK1 0220 Location: 508963-509236 bp Feature: gene Location: 509842-510927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509872-510409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 509872-51 0409 bp Feature: domain Description: GIIM Note: maturase Location: 510484-510682 bp Feature: domain Description: GIIM Note: maturase Location: 51 0484-51 0682 bp Feature: gene Location: 510997-511365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 511270-511363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 1 270-51 1 363 bp Feature: gene Location: 511957-512283 bp Feature: domain Description: PHA02517 Location: 511963-512218 bp Feature: domain Description: PHA0251 7 Location: 51 1 963-51 221 8 bp Feature: gene Location: 512523-512702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10837 (putative DNA-binding transcriptional regulator; Provisional), HTH_32 (pfam13565), rve (pfam00665), RVT-GII, TnpB_IS66 (pfam05717), RVT-UG4, FimA (pfam16970), PRK15287 (fimbrial minor subunit StfF), DoxX (pfam07681), PRK10220 (phnA family protein)
GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: VOUU01000042.1 Serratia nematodiphila strain S8 NODE_9_length_171617_cov_88.010068, whole genome shotgun sequence (171617 bp)
Overview 1 RT 1: 26314-32027 bp Neighborhood of RT #1 [26314, 32032] MipA RVT-UG4 FimA PRK15287 Feature: gene Location: 26314-27102 bp Feature: domain Description: MipA Location: 26422-27100 bp Feature: domain Description: MipA Location: 2 642 2 -2 7100 bp Feature: gene Location: 29064-29900 bp Feature: gene Location: 29942-30928 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 30299-30746 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 302 99-30746 bp Feature: gene Location: 30946-31521 bp Feature: domain Description: FimA Location: 31009-31519 bp Feature: domain Description: FimA Location: 31009-31519 bp Feature: gene Location: 31532-32032 bp Feature: domain Description: PRK15287 Location: 31586-32027 bp Feature: domain Description: PRK152 87 Location: 31586-32 02 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MipA (pfam06629), RVT-UG4, FimA (pfam16970), PRK15287 (fimbrial minor subunit StfF)