myRT

myRT report for GCA_008012255.1_ASM801225v1

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Seq: SSEI01000109.1 Gammaproteobacteria bacterium isolate Bin_14_5 c_000000051421, whole genome shotgun sequence (10817 bp)
Overview 1 RT 1: 5623-9991 bp Neighborhood of RT #1 [5623, 9991] KAP_NTPase RVT-Retrons HTH_XRE Feature: gene Location: 5623-6504 bp Feature: gene Location: 6504-8438 bp Ori: TXH11280.1 Feature: domain Description: KAP_NTPase Location: 6558-7647 bp Feature: domain Description: KAP_NTPase Location: 6558-7647 bp Feature: gene Location: 8457-9428 bp Ori: TXH11281.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8607-9171 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8607-91 71 bp Feature: gene Location: 9394-9699 bp Ori: TXH11282.1 Feature: domain Description: HTH_XRE Location: 9406-9568 bp Feature: domain Description: HTH_XRE Location: 9406-9568 bp Feature: gene Location: 9752-9991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KAP_NTPase (pfam07693), RVT-Retrons, HTH_XRE (smart00530)

Seq: SSEI01000070.1 Gammaproteobacteria bacterium isolate Bin_14_5 c_000000142468, whole genome shotgun sequence (64637 bp)
Overview 1 RT 1: 1-7336 bp Neighborhood of RT #1 [1, 7803] HEPN_Swt1 HEPN_Swt1 RVT-UG12 YfcA HpnJ Feature: gene Location: 1-2356 bp Feature: gene Location: 2360-3097 bp Ori: TXH12762.1 Feature: domain Description: HEPN_Swt1 Location: 2726-2831 bp Feature: domain Description: HEPN_Swt1 Location: 2 72 6-2 831 bp Feature: domain Description: HEPN_Swt1 Location: 2861-2999 bp Feature: domain Description: HEPN_Swt1 Location: 2 861-2 999 bp Feature: gene Location: 3094-4701 bp Ori: TXH12763.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 3475-3898 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 3475-3898 bp Feature: gene Location: 5296-6075 bp Ori: TXH12764.1 Feature: domain Description: YfcA Location: 5314-6061 bp Feature: domain Description: YfcA Location: 5314-6061 bp Feature: gene Location: 6151-7803 bp Ori: TXH12765.1 Feature: domain Description: HpnJ Location: 6340-7336 bp Feature: domain Description: HpnJ Location: 6340-7336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEPN_Swt1 (pfam18731), RVT-UG12, YfcA (COG0730), HpnJ (TIGR03471)