myRT

myRT report for GCA_008014345.1_ASM801434v1

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Seq: VPFL01000012.1 Hydrogenophilales bacterium SM250 NODE_12_length_105006_cov_74.423049, whole genome shotgun sequence (105006 bp)
Overview 1 RT 1: 80578-83811 bp Neighborhood of RT #1 [80578, 83828] RVT-Retrons MPP_Mre11_N Zn_Tnp_IS1595 Zn_Tnp_IS1595 Feature: gene Location: 80578-80715 bp Feature: gene Location: 80744-81046 bp Feature: gene Location: 81230-81871 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81281-81623 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81 281 -81 623 bp Feature: gene Location: 82399-83613 bp Feature: domain Description: MPP_Mre11_N Location: 82414-83146 bp Feature: domain Description: MPP_Mre1 1 _N Location: 8241 4-831 46 bp Feature: gene Location: 83625-83828 bp Feature: domain Description: Zn_Tnp_IS1595 Location: 83649-83697 bp Feature: domain Description: Zn_Tnp_IS1 595 Location: 83649-83697 bp Feature: domain Description: Zn_Tnp_IS1595 Location: 83754-83811 bp Feature: domain Description: Zn_Tnp_IS1 595 Location: 83754-8381 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, MPP_Mre11_N (cd00840), Zn_Tnp_IS1595 (pfam12760)

Seq: VPFL01000001.1 Hydrogenophilales bacterium SM250 NODE_1_length_299094_cov_50.451799, whole genome shotgun sequence (299094 bp)
Overview 1 RT 1: 170493-175897 bp Neighborhood of RT #1 [170493, 175897] Na_symport_sm Na_symport_lg RVT-GII GIIM TPR TPR_2 Feature: gene Location: 170493-170756 bp Feature: domain Description: Na_symport_sm Location: 170520-170745 bp Feature: domain Description: Na_symport_sm Location: 17052 0-170745 bp Feature: gene Location: 170760-172838 bp Feature: domain Description: Na_symport_lg Location: 170898-172803 bp Feature: domain Description: Na_symport_lg Location: 170898-172 803 bp Feature: gene Location: 172927-174351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173287-173902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1732 87-173902 bp Feature: domain Description: GIIM Note: maturase Location: 173953-174172 bp Feature: domain Description: GIIM Note: maturase Location: 173953-174172 bp Feature: gene Location: 174812-175411 bp Feature: domain Description: TPR Location: 174845-175121 bp Feature: domain Description: TPR Location: 174845-17512 1 bp Feature: domain Description: TPR_2 Location: 175145-175235 bp Feature: domain Description: TPR_2 Location: 175145-1752 35 bp Feature: gene Location: 175550-175897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Na_symport_sm (TIGR03647), Na_symport_lg (TIGR03648), RVT-GII, GIIM (pfam08388), TPR (smart00028), TPR_2 (pfam07719)

Seq: VPFL01000009.1 Hydrogenophilales bacterium SM250 NODE_9_length_111607_cov_50.958235, whole genome shotgun sequence (111607 bp)
Overview 1 RT 1: 39318-45135 bp Neighborhood of RT #1 [39318, 45158] Avd_like RVT-DGRs HAMP GAF_2 GGDEF EAL GspH Feature: gene Location: 39318-40427 bp Feature: gene Location: 40434-40853 bp Feature: domain Description: Avd_like Location: 40533-40836 bp Feature: domain Description: Avd_like Location: 4053 3 -4083 6 bp Feature: gene Location: 40850-42124 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41300-41960 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 413 00-41960 bp Feature: gene Location: 42248-44284 bp Feature: domain Description: HAMP Location: 42287-42428 bp Feature: domain Description: HAMP Location: 42287-42428 bp Feature: domain Description: GAF_2 Location: 42512-42956 bp Feature: domain Description: GAF_2 Location: 42512-42956 bp Feature: domain Description: GGDEF Location: 42986-43472 bp Feature: domain Description: GGDEF Location: 42986-43 472 bp Feature: domain Description: EAL Location: 43526-44246 bp Feature: domain Description: EAL Location: 43 526-44246 bp Feature: gene Location: 44679-45158 bp Feature: domain Description: GspH Location: 44769-45135 bp Feature: domain Description: GspH Location: 44769-4513 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, HAMP (smart00304), GAF_2 (pfam13185), GGDEF (TIGR00254), EAL (smart00052), GspH (pfam12019)