myRT

myRT report for GCA_008015345.1_ASM801534v1

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Seq: SSFJ01000169.1 Pseudoxanthomonas sp. isolate Bin_14_4 c_000000044320, whole genome shotgun sequence (6125 bp)
Overview 1 RT 1: 597-3984 bp Neighborhood of RT #1 [597, 4031] RVT_N RVT-GII GIIM HNHc COG4517 KefB Feature: gene Location: 597-2300 bp Feature: RT Description: RVT_N Location: 648-885 bp Feature: RT Description: RVT_N Location: 648-885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 936-1581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 936-1 581 bp Feature: domain Description: GIIM Note: maturase Location: 1647-1869 bp Feature: domain Description: GIIM Note: maturase Location: 1 647-1 869 bp Feature: domain Description: HNHc Note: nucleases Location: 2112-2253 bp Feature: domain Description: HNHc Note: nucleases Location: 21 1 2-2253 bp Feature: gene Location: 2360-2701 bp Feature: domain Description: COG4517 Location: 2384-2699 bp Feature: domain Description: COG451 7 Location: 2384-2699 bp Feature: gene Location: 2766-4031 bp Feature: domain Description: KefB Location: 2793-3984 bp Feature: domain Description: KefB Location: 2793-3984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4517 (Uncharacterized protein ), KefB (COG0475), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: SSFJ01000200.1 Pseudoxanthomonas sp. isolate Bin_14_4 c_000000149139, whole genome shotgun sequence (7602 bp)
Overview 1 RT 1: 22-3547 bp Neighborhood of RT #1 [22, 3600] DsbG RVT-Retrons Tra5 HTH_Tnp_1 Feature: gene Location: 22-240 bp Feature: domain Description: DsbG Location: 103-235 bp Feature: domain Description: DsbG Location: 103-2 35 bp Feature: gene Location: 479-2266 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 749-1253 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 749-12 53 bp Feature: gene Location: 2498-3304 bp Feature: domain Description: Tra5 Location: 2537-3278 bp Feature: domain Description: Tra5 Location: 2 537-32 78 bp Feature: gene Location: 3337-3600 bp Feature: domain Description: HTH_Tnp_1 Location: 3343-3547 bp Feature: domain Description: HTH_Tnp_1 Location: 3343-3547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), HTH_Tnp_1 (pfam01527), RVT-Retrons