myRT

myRT report for GCA_008016795.1_ASM801679v1

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Seq: SDIK01000010.1 Prevotella sp. A2672 A2672_contig_10__1..74593__consensus, whole genome shotgun sequence (74593 bp)
Overview 1 RT 1: 11668-18739 bp Neighborhood of RT #1 [11668, 21534] RVT-DGRs Laminin_G_3 pfam08757 Feature: gene Location: 11668-12006 bp Feature: gene Location: 12370-12864 bp Feature: gene Location: 12864-14165 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13074-13752 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 3074-1 3752 bp Feature: gene Location: 14261-14533 bp Feature: gene Location: 14650-21534 bp Feature: domain Description: Laminin_G_3 Location: 17005-17431 bp Feature: domain Description: Laminin_G_3 Location: 1 7005-1 7431 bp Feature: domain Description: pfam08757 Location: 17692-18739 bp Feature: domain Description: pfam08757 Location: 1 7692-1 8739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein)

Seq: SDIK01000003.1 Prevotella sp. A2672 A2672_contig_3__1..41949__consensus, whole genome shotgun sequence (41949 bp)
Overview 1 RT 1: 31832-38314 bp Neighborhood of RT #1 [31832, 38314] SlpA Peptidases_S8_CspA-like Peptidases_S8_CspA-like RVT-DGRs Feature: gene Location: 31832-32434 bp Feature: domain Description: SlpA Location: 31838-32360 bp Feature: domain Description: SlpA Location: 31838-32 360 bp Feature: gene Location: 32545-34713 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 33034-33682 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 33034-33682 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 34039-34522 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 34039-3452 2 bp Feature: gene Location: 35530-36141 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35563-35905 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 35563-35905 bp Feature: gene Location: 36340-36525 bp Feature: gene Location: 36641-38314 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SlpA (COG1047), Peptidases_S8_CspA-like (cd07478), RVT-DGRs

Seq: SDIK01000065.1 Prevotella sp. A2672 A2672_contig_68__1..8999__consensus, whole genome shotgun sequence (8999 bp)
Overview 1 RT 1: 243-4124 bp Neighborhood of RT #1 [243, 4909] RVT_N RVT-GII GIIM YWFCY Relaxase Feature: gene Location: 243-1808 bp Feature: RT Description: RVT_N Location: 306-549 bp Feature: RT Description: RVT_N Location: 3 06-549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 594-1242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 594-1242 bp Feature: domain Description: GIIM Note: maturase Location: 1293-1527 bp Feature: domain Description: GIIM Note: maturase Location: 1293 -1527 bp Feature: gene Location: 2423-3145 bp Feature: domain Description: YWFCY Location: 2432-2606 bp Feature: domain Description: YWFCY Location: 243 2-2606 bp Feature: gene Location: 3179-4909 bp Feature: domain Description: Relaxase Location: 3767-4124 bp Feature: domain Description: Relaxase Location: 3 767-4124 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Relaxase (pfam03432)