myRT

myRT report for GCA_008033395.1_ASM803339v1

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Seq: VOGZ01000002.1 Flavobacterium sp. XN-5 Scaffold2_1, whole genome shotgun sequence (433296 bp)
Overview 1 RT 1: 392817-400017 bp Neighborhood of RT #1 [392817, 400017] SMC_N AAA_15 RVT-UG28b VirE_N Feature: gene Location: 392817-395246 bp Feature: domain Description: SMC_N Location: 392832-394683 bp Feature: domain Description: SMC_N Location: 392832-394683 bp Feature: gene Location: 395282-396145 bp Feature: domain Description: AAA_15 Location: 395465-395870 bp Feature: domain Description: AAA_1 5 Location: 395465-395870 bp Feature: gene Location: 396149-397900 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 396602-397295 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 396602-397295 bp Feature: gene Location: 398081-399070 bp Feature: domain Description: VirE_N Location: 398264-398618 bp Feature: domain Description: VirE_N Location: 398264-39861 8 bp Feature: gene Location: 399727-400017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMC_N (pfam02463), AAA_15 (pfam13175), RVT-UG28b, VirE_N (pfam08800)

Seq: VOGZ01000014.1 Flavobacterium sp. XN-5 Scaffold14_1, whole genome shotgun sequence (42674 bp)
Overview 1 RT 1: 8284-18366 bp 2 RT 2: 32224-37883 bp Neighborhood of RT #1 [8284, 18366] COG3415 COG3464 HTH_7 COG3464 RVT-UG12 LbH_XAT Phage_int_SAM_4 INT_IntI_C Y2_Tnp RVT-Retrons Neighborhood of RT #2 [32224, 37883] Dcm HATPase_c_3 RVT-GII GIIM Feature: gene Location: 8284-8748 bp Feature: domain Description: COG3415 Location: 8380-8728 bp Feature: domain Description: COG3415 Location: 8380-872 8 bp Feature: gene Location: 8812-10446 bp Feature: domain Description: COG3464 Location: 8923-9580 bp Feature: domain Description: COG3464 Location: 892 3-9580 bp Feature: domain Description: HTH_7 Location: 9703-9799 bp Feature: domain Description: HTH_7 Location: 9703-9799 bp Feature: domain Description: COG3464 Location: 10063-10417 bp Feature: domain Description: COG3464 Location: 10063-10417 bp Feature: gene Location: 10569-12197 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 10929-11385 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1092 9-11385 bp Feature: gene Location: 12296-12628 bp Feature: domain Description: LbH_XAT Location: 12383-12593 bp Feature: domain Description: LbH_XAT Location: 12 383-12 593 bp Feature: gene Location: 12828-13829 bp Feature: domain Description: Phage_int_SAM_4 Location: 12960-13179 bp Feature: domain Description: Phage_int_SAM_4 Location: 12 960-13179 bp Feature: domain Description: INT_IntI_C Location: 13242-13755 bp Feature: domain Description: INT_IntI_C Location: 132 42 -13755 bp Feature: gene Location: 14099-14923 bp Feature: domain Description: Y2_Tnp Location: 14219-14738 bp Feature: domain Description: Y2 _Tnp Location: 142 19-14738 bp Feature: gene Location: 15150-16109 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15300-15849 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15300-15849 bp Feature: gene Location: 16312-17205 bp Feature: gene Location: 17935-18366 bp Feature: gene Location: 32224-33273 bp Feature: domain Description: Dcm Location: 32233-33256 bp Feature: domain Description: Dcm Location: 32 2 33-332 56 bp Feature: gene Location: 33307-35247 bp Feature: domain Description: HATPase_c_3 Location: 33373-33757 bp Feature: domain Description: HATPase_c_3 Location: 33373-33757 bp Feature: gene Location: 35475-36704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35688-36339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35688-36339 bp Feature: domain Description: GIIM Note: maturase Location: 36426-36603 bp Feature: domain Description: GIIM Note: maturase Location: 3642 6-36603 bp Feature: gene Location: 37351-37608 bp Feature: gene Location: 37743-37883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), COG3464 (Transposase ), HTH_7 (pfam02796), RVT-UG12, LbH_XAT (cd03349), Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193), Y2_Tnp (pfam04986), RVT-Retrons, Dcm (COG0270)
HATPase_c_3 (pfam13589), RVT-GII, GIIM (pfam08388)