myRT

myRT report for GCA_008083085.1_ASM808308v1

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Seq: QYMG01000115.1 Escherichia coli strain N015.H-15 NODE_115_length_2881_cov_37.5, whole genome shotgun sequence (2881 bp)
Overview 1 RT 1: 704-2633 bp Neighborhood of RT #1 [704, 2878] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 704-1108 bp Feature: domain Description: InsE Location: 734-1070 bp Feature: domain Description: InsE Location: 734-1 070 bp Feature: gene Location: 1137-1493 bp Feature: domain Description: PHA02517 Location: 1140-1449 bp Feature: domain Description: PHA0251 7 Location: 1 1 40-1 449 bp Feature: gene Location: 1610-2878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1628-2360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 628-2360 bp Feature: domain Description: GIIM Note: maturase Location: 2435-2633 bp Feature: domain Description: GIIM Note: maturase Location: 2435-2633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: QYMG01000131.1 Escherichia coli strain N015.H-15 NODE_131_length_1678_cov_66.1399, whole genome shotgun sequence (1678 bp)
Overview 1 RT 1: 3-1673 bp Neighborhood of RT #1 [3, 1675] RVT-GII InsE Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 76-330 bp Feature: gene Location: 960-1178 bp Feature: gene Location: 1400-1675 bp Feature: domain Description: InsE Location: 1442-1673 bp Feature: domain Description: InsE Location: 1442 -1673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963)

Seq: QYMG01000016.1 Escherichia coli strain N015.H-15 NODE_16_length_86527_cov_17.2773, whole genome shotgun sequence (86527 bp)
Overview 1 RT 1: 53165-56491 bp Neighborhood of RT #1 [53165, 56491] FRG RVT-Retrons HTH_XRE Feature: gene Location: 53165-53314 bp Feature: gene Location: 53353-54717 bp Feature: domain Description: FRG Location: 53920-54205 bp Feature: domain Description: FRG Location: 53 920-54205 bp Feature: gene Location: 54826-55776 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 55006-55549 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 55006-55549 bp Feature: gene Location: 55742-56062 bp Feature: domain Description: HTH_XRE Location: 55757-55916 bp Feature: domain Description: HTH_XRE Location: 55757-55916 bp Feature: gene Location: 56099-56491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FRG (smart00901), RVT-Retrons, HTH_XRE (smart00530)

Seq: QYMG01000033.1 Escherichia coli strain N015.H-15 NODE_33_length_50353_cov_22.8695, whole genome shotgun sequence (50353 bp)
Overview 1 RT 1: 21682-27713 bp Neighborhood of RT #1 [21682, 27713] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 21682-22602 bp Feature: domain Description: AbiEii Location: 21724-22465 bp Feature: domain Description: AbiEii Location: 21724 -224 65 bp Feature: gene Location: 22589-23392 bp Feature: domain Description: AbiEi_3_N Location: 22622-22883 bp Feature: domain Description: AbiEi_3_N Location: 22622-22883 bp Feature: domain Description: AbiEi_3 Location: 22895-23351 bp Feature: domain Description: AbiEi_3 Location: 22895-23351 bp Feature: gene Location: 23687-26896 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24215-24704 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24 215-24 704 bp Feature: domain Description: nitrilase Location: 26210-26807 bp Feature: domain Description: nitrilase Location: 26210-26807 bp Feature: gene Location: 27057-27197 bp Feature: domain Description: Phage_ASH Location: 27084-27177 bp Feature: domain Description: Phage_ASH Location: 27084 -27177 bp Feature: gene Location: 27243-27713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: QYMG01000070.1 Escherichia coli strain N015.H-15 NODE_70_length_11665_cov_32.1085, whole genome shotgun sequence (11665 bp)
Overview 1 RT 1: 10631-11504 bp Neighborhood of RT #1 [10631, 11662] PRK10173 PRK10173 RVT-GII Feature: gene Location: 10631-11080 bp Feature: domain Description: PRK10173 Location: 10634-11072 bp Feature: domain Description: PRK10173 Location: 10634-11072 bp Feature: gene Location: 11064-11375 bp Feature: domain Description: PRK10173 Location: 11067-11286 bp Feature: domain Description: PRK10173 Location: 11067-11286 bp Feature: gene Location: 11414-11662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11432-11504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11432-115 04 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII