myRT

myRT report for GCA_008083325.1_ASM808332v1

Download annotations/find similar RTs

Seq: VSIO01000059.1 Vibrio cholerae strain N2822 NODE_244, whole genome shotgun sequence (71811 bp)
Overview 1 RT 1: 1066-7028 bp Neighborhood of RT #1 [1066, 7039] Gmd GDP_FS_SDR_e RVT-GII GIIM YhhI YhhI YhhI PRK15434 Feature: gene Location: 1066-2172 bp Feature: domain Description: Gmd Location: 1069-2119 bp Feature: domain Description: Gmd Location: 1 069-21 1 9 bp Feature: gene Location: 2175-3149 bp Feature: domain Description: GDP_FS_SDR_e Location: 2199-3123 bp Feature: domain Description: GDP_FS_SDR_e Location: 21 99-31 23 bp Feature: gene Location: 3745-5070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4024-4681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4024-4681 bp Feature: domain Description: GIIM Note: maturase Location: 4762-4978 bp Feature: domain Description: GIIM Note: maturase Location: 4762-4978 bp Feature: gene Location: 5305-6444 bp Feature: domain Description: YhhI Location: 5341-5671 bp Feature: domain Description: YhhI Location: 5341 -5671 bp Feature: domain Description: YhhI Location: 5728-6079 bp Feature: domain Description: YhhI Location: 5728-6079 bp Feature: domain Description: YhhI Location: 6082-6358 bp Feature: domain Description: YhhI Location: 6082-6358 bp Feature: gene Location: 6575-7039 bp Feature: domain Description: PRK15434 Location: 6587-7028 bp Feature: domain Description: PRK1 5434 Location: 6587-7028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_FS_SDR_e (cd05239), RVT-GII, GIIM (pfam08388), YhhI (COG5433), PRK15434 (GDP-mannose mannosyl hydrolase)

Seq: VSIO01000066.1 Vibrio cholerae strain N2822 NODE_332, whole genome shotgun sequence (252409 bp)
Overview 1 RT 1: 31041-36269 bp Neighborhood of RT #1 [31041, 36271] RVT_N RVT-GII GIIM Tar PRK13340 Feature: gene Location: 31041-31223 bp Feature: gene Location: 31354-31530 bp Feature: gene Location: 31727-33199 bp Feature: RT Description: RVT_N Location: 31775-32018 bp Feature: RT Description: RVT_N Location: 31775-32 018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32063-32690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 063-32 690 bp Feature: domain Description: GIIM Note: maturase Location: 32747-32975 bp Feature: domain Description: GIIM Note: maturase Location: 32 747-32 975 bp Feature: gene Location: 33248-34936 bp Feature: domain Description: Tar Location: 33713-34931 bp Feature: domain Description: Tar Location: 33713-34931 bp Feature: gene Location: 35027-36271 bp Feature: domain Description: PRK13340 Location: 35060-36269 bp Feature: domain Description: PRK13340 Location: 35060-362 69 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Tar (COG0840), PRK13340 (alanine racemase; Reviewed)

Seq: VSIO01000027.1 Vibrio cholerae strain N2822 NODE_36, whole genome shotgun sequence (238216 bp)
Overview 1 RT 1: 110762-114646 bp Neighborhood of RT #1 [110762, 114768] RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 110762-110950 bp Feature: gene Location: 111168-111320 bp Feature: gene Location: 111568-112515 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 111682-112279 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 111682-112279 bp Feature: gene Location: 112516-114138 bp Feature: domain Description: COG3950 Location: 112702-114133 bp Feature: domain Description: COG3 950 Location: 112702-11413 3 bp Feature: gene Location: 114151-114768 bp Feature: domain Description: TIGR02646 Location: 114262-114646 bp Feature: domain Description: TIGR02646 Location: 114262-114646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: VSIO01000039.1 Vibrio cholerae strain N2822 NODE_60, whole genome shotgun sequence (221472 bp)
Overview 1 RT 1: 145378-148946 bp Neighborhood of RT #1 [145378, 148946] DUF2188 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 145378-145938 bp Feature: gene Location: 146265-146486 bp Feature: domain Description: DUF2188 Location: 146280-146457 bp Feature: domain Description: DUF2188 Location: 14 6280-14 64 57 bp Feature: gene Location: 146672-148372 bp Feature: RT Description: RVT_N Location: 146744-146987 bp Feature: RT Description: RVT_N Location: 14 674 4 -14 6987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147032-147677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 7032-14 7677 bp Feature: domain Description: GIIM Note: maturase Location: 147728-147962 bp Feature: domain Description: GIIM Note: maturase Location: 14 7728-14 7962 bp Feature: domain Description: HNHc Note: nucleases Location: 148178-148340 bp Feature: domain Description: HNHc Note: nucleases Location: 14 8178-14 834 0 bp Feature: gene Location: 148532-148702 bp Feature: gene Location: 148785-148946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)