myRT

myRT report for GCA_008083455.1_ASM808345v1

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Seq: VSIH01000041.1 Vibrio cholerae strain N2812 NODE_115, whole genome shotgun sequence (583057 bp)
Overview 1 RT 1: 223851-231289 bp Neighborhood of RT #1 [223851, 231309] modA PRK00784 RVT-Retrons AAA_15 AAA_15 Hypoth_Ymh Feature: gene Location: 223851-224609 bp Feature: domain Description: modA Location: 223878-224595 bp Feature: domain Description: modA Location: 223878-224595 bp Feature: gene Location: 224621-226165 bp Feature: domain Description: PRK00784 Location: 224717-226151 bp Feature: domain Description: PRK00784 Location: 22471 7-2261 51 bp Feature: gene Location: 226968-228068 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 227112-227667 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2271 1 2-227667 bp Feature: gene Location: 228244-230361 bp Feature: domain Description: AAA_15 Location: 228247-228664 bp Feature: domain Description: AAA_1 5 Location: 228247-228664 bp Feature: domain Description: AAA_15 Location: 228799-229228 bp Feature: domain Description: AAA_1 5 Location: 228799-229228 bp Feature: gene Location: 230509-231309 bp Feature: domain Description: Hypoth_Ymh Location: 230929-231289 bp Feature: domain Description: Hypoth_Ymh Location: 230929-231 289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modA (TIGR01256), PRK00784 (cobyric acid synthase), RVT-Retrons, AAA_15 (pfam13175), Hypoth_Ymh (pfam09509)

Seq: VSIH01000002.1 Vibrio cholerae strain N2812 NODE_2, whole genome shotgun sequence (160858 bp)
Overview 1 RT 1: 106145-111869 bp Neighborhood of RT #1 [106145, 111869] groEL RVT_N RVT-GII GIIM HNHc DUF2188 Feature: gene Location: 106145-107779 bp Feature: domain Description: groEL Location: 106151-107774 bp Feature: domain Description: groEL Location: 106151-107774 bp Feature: gene Location: 108301-108462 bp Feature: gene Location: 108875-110575 bp Feature: RT Description: RVT_N Location: 108947-109190 bp Feature: RT Description: RVT_N Location: 108947-109190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109235-109880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1092 35-109880 bp Feature: domain Description: GIIM Note: maturase Location: 109931-110165 bp Feature: domain Description: GIIM Note: maturase Location: 109931-110165 bp Feature: domain Description: HNHc Note: nucleases Location: 110381-110543 bp Feature: domain Description: HNHc Note: nucleases Location: 110381-110543 bp Feature: gene Location: 110761-110982 bp Feature: domain Description: DUF2188 Location: 110776-110953 bp Feature: domain Description: DUF2 188 Location: 110776-110953 bp Feature: gene Location: 111309-111869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF2188 (pfam09954)