myRT

myRT report for GCA_008084025.1_ASM808402v1

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Seq: VSHG01000067.1 Vibrio cholerae strain N2776 NODE_304, whole genome shotgun sequence (97565 bp)
Overview 1 RT 1: 87472-95434 bp Neighborhood of RT #1 [87472, 95457] COG0610 DUF45 RVT-UG2 PinE Feature: gene Location: 87472-90843 bp Feature: domain Description: COG0610 Location: 87517-90592 bp Feature: domain Description: COG061 0 Location: 8751 7-90592 bp Feature: gene Location: 90875-91576 bp Feature: domain Description: DUF45 Location: 90947-91556 bp Feature: domain Description: DUF45 Location: 90947-91 556 bp Feature: gene Location: 92218-93528 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 92419-93232 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 9241 9-93232 bp Feature: gene Location: 93688-94659 bp Feature: gene Location: 94858-95457 bp Feature: domain Description: PinE Location: 94876-95434 bp Feature: domain Description: PinE Location: 94876-95434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), DUF45 (pfam01863), RVT-UG2, PinE (COG1961)

Seq: VSHG01000009.1 Vibrio cholerae strain N2776 NODE_9, whole genome shotgun sequence (152053 bp)
Overview 1 RT 1: 21764-27488 bp Neighborhood of RT #1 [21764, 27488] groEL RVT_N RVT-GII GIIM HNHc DUF2188 Feature: gene Location: 21764-23398 bp Feature: domain Description: groEL Location: 21770-23393 bp Feature: domain Description: groEL Location: 2 1770-2 3393 bp Feature: gene Location: 23920-24081 bp Feature: gene Location: 24494-26194 bp Feature: domain Description: RVT_N Location: 24566-24809 bp Feature: domain Description: RVT_N Location: 2 4566-2 4809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24854-25499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4854-2 5499 bp Feature: domain Description: GIIM Note: maturase Location: 25550-25784 bp Feature: domain Description: GIIM Note: maturase Location: 2 5550-2 5784 bp Feature: domain Description: HNHc Note: nucleases Location: 26000-26162 bp Feature: domain Description: HNHc Note: nucleases Location: 2 6000-2 6162 bp Feature: gene Location: 26380-26601 bp Feature: domain Description: DUF2188 Location: 26395-26572 bp Feature: domain Description: DUF2 188 Location: 2 6395-2 6572 bp Feature: gene Location: 26928-27488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF2188 (pfam09954)