myRT

myRT report for GCA_008084145.1_ASM808414v1

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Seq: VSDO01000001.1 Paenibacillus faecis strain DSM 23593 contig1, whole genome shotgun sequence (1787465 bp)
Overview 1 RT 1: 567976-571223 bp 2 RT 2: 1771572-1779093 bp Neighborhood of RT #1 [567976, 571225] AgaS MngR RVT-GII group_II_RT_mat PRK05803 Neighborhood of RT #2 [1771572, 1779119] UgpE UgpA RVT-GII GIIM MngR PurR GxGYxYP_N GxGYxYP_N GxGYxYP_C Feature: gene Location: 567976-568950 bp Feature: domain Description: AgaS Location: 567991-568948 bp Feature: domain Description: AgaS Location: 567991 -568948 bp Feature: gene Location: 569159-569869 bp Feature: domain Description: MngR Location: 569174-569864 bp Feature: domain Description: MngR Location: 5691 74-569864 bp Feature: gene Location: 570250-570564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570259-570406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570259-570406 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 570451-570559 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 570451 -570559 bp Feature: gene Location: 570573-570794 bp Feature: gene Location: 570983-571225 bp Feature: domain Description: PRK05803 Location: 570986-571223 bp Feature: domain Description: PRK05803 Location: 570986-571 223 bp Feature: gene Location: 1771572-1772498 bp Feature: domain Description: UgpE Location: 1771623-1772493 bp Feature: domain Description: UgpE Location: 1 771 623-1 772493 bp Feature: gene Location: 1772455-1773459 bp Feature: domain Description: UgpA Location: 1772524-1773376 bp Feature: domain Description: UgpA Location: 1 772524-1 773376 bp Feature: gene Location: 1773685-1774977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1773985-1774618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 773985-1 77461 8 bp Feature: domain Description: GIIM Note: maturase Location: 1774711-1774915 bp Feature: domain Description: GIIM Note: maturase Location: 1 77471 1 -1 77491 5 bp Feature: gene Location: 1775575-1776825 bp Feature: domain Description: MngR Location: 1775584-1775797 bp Feature: domain Description: MngR Location: 1 775584-1 775797 bp Feature: domain Description: PurR Location: 1775953-1776808 bp Feature: domain Description: PurR Location: 1 775953-1 776808 bp Feature: gene Location: 1777059-1779119 bp Feature: domain Description: GxGYxYP_N Location: 1777275-1777680 bp Feature: domain Description: GxGYxYP_N Location: 1 777275-1 777680 bp Feature: domain Description: GxGYxYP_N Location: 1778136-1778376 bp Feature: domain Description: GxGYxYP_N Location: 1 7781 36-1 778376 bp Feature: domain Description: GxGYxYP_C Location: 1778430-1779093 bp Feature: domain Description: GxGYxYP_C Location: 1 778430-1 779093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AgaS (COG2222), MngR (COG2188), RVT-GII, group_II_RT_mat (TIGR04416), PRK05803 (RNA polymerase sporulation sigma factor SigK), UgpE (COG0395), UgpA (COG1175), GIIM (pfam08388), PurR (COG1609), GxGYxYP_N (pfam16216)
GxGYxYP_C (pfam14323)

Seq: VSDO01000002.1 Paenibacillus faecis strain DSM 23593 contig2, whole genome shotgun sequence (1246509 bp)
Overview 1 RT 1: 1038561-1041315 bp Neighborhood of RT #1 [1038561, 1041315] RVT-GII GIIM HTH_XRE Feature: gene Location: 1038561-1038758 bp Feature: gene Location: 1038960-1039109 bp Feature: gene Location: 1039259-1040551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1039559-1040192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1039559-1040192 bp Feature: domain Description: GIIM Note: maturase Location: 1040285-1040489 bp Feature: domain Description: GIIM Note: maturase Location: 10402 85-1040489 bp Feature: gene Location: 1040659-1040877 bp Feature: domain Description: HTH_XRE Location: 1040668-1040836 bp Feature: domain Description: HTH_XRE Location: 1040668-1040836 bp Feature: gene Location: 1041028-1041315 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530)

Seq: VSDO01000005.1 Paenibacillus faecis strain DSM 23593 contig5, whole genome shotgun sequence (738465 bp)
Overview 1 RT 1: 166905-177185 bp Neighborhood of RT #1 [166905, 177185] YtxK COG4646 RVT-GII Intron_maturas2 HNHc HepA IncA Feature: gene Location: 166905-173186 bp Feature: domain Description: YtxK Location: 169815-170208 bp Feature: domain Description: YtxK Location: 169815-170208 bp Feature: domain Description: COG4646 Location: 170292-172869 bp Feature: domain Description: COG4646 Location: 170292-172869 bp Feature: gene Location: 173421-173648 bp Feature: gene Location: 173885-175597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174041-174878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174041-174878 bp Feature: domain Description: Intron_maturas2 Location: 174932-175220 bp Feature: domain Description: Intron_maturas2 Location: 17493 2-175220 bp Feature: domain Description: HNHc Note: nucleases Location: 175421-175568 bp Feature: domain Description: HNHc Note: nucleases Location: 175421-175568 bp Feature: gene Location: 175631-176719 bp Feature: domain Description: HepA Location: 175748-175955 bp Feature: domain Description: HepA Location: 175748-175955 bp Feature: domain Description: IncA Location: 176318-176618 bp Feature: domain Description: IncA Location: 1763 18-176618 bp Feature: gene Location: 176901-177185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HepA (COG0553), IncA