myRT

myRT report for GCA_008084545.1_ASM808454v1

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Seq: VSGP01000013.1 Vibrio cholerae strain N2756 NODE_20, whole genome shotgun sequence (160519 bp)
Overview 1 RT 1: 105808-111532 bp Neighborhood of RT #1 [105808, 111532] groEL RVT_N RVT-GII GIIM HNHc DUF2188 Feature: gene Location: 105808-107442 bp Feature: domain Description: groEL Location: 105814-107437 bp Feature: domain Description: groEL Location: 1 0581 4-1 07437 bp Feature: gene Location: 107964-108125 bp Feature: gene Location: 108538-110238 bp Feature: RT Description: RVT_N Location: 108610-108853 bp Feature: RT Description: RVT_N Location: 1 0861 0-1 08853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108898-109543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 08898-1 09543 bp Feature: domain Description: GIIM Note: maturase Location: 109594-109828 bp Feature: domain Description: GIIM Note: maturase Location: 1 09594-1 09828 bp Feature: domain Description: HNHc Note: nucleases Location: 110044-110206 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 0044-1 1 0206 bp Feature: gene Location: 110424-110645 bp Feature: domain Description: DUF2188 Location: 110439-110616 bp Feature: domain Description: DUF21 88 Location: 1 1 0439-1 1 061 6 bp Feature: gene Location: 110972-111532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF2188 (pfam09954)

Seq: VSGP01000062.1 Vibrio cholerae strain N2756 NODE_250, whole genome shotgun sequence (520787 bp)
Overview 1 RT 1: 289622-297066 bp Neighborhood of RT #1 [289622, 297080] Hypoth_Ymh AAA_15 AAA_15 RVT-Retrons PRK00784 modA Feature: gene Location: 289622-290422 bp Feature: domain Description: Hypoth_Ymh Location: 290042-290402 bp Feature: domain Description: Hypoth_Ymh Location: 2 90042 -2 90402 bp Feature: gene Location: 290570-292687 bp Feature: domain Description: AAA_15 Location: 290573-290990 bp Feature: domain Description: AAA_15 Location: 2 90573-2 90990 bp Feature: domain Description: AAA_15 Location: 291125-291554 bp Feature: domain Description: AAA_15 Location: 2 9112 5-2 91554 bp Feature: gene Location: 292863-293963 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 293007-293562 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 93007-2 93562 bp Feature: gene Location: 294766-296310 bp Feature: domain Description: PRK00784 Location: 294862-296296 bp Feature: domain Description: PRK00784 Location: 2 94862 -2 962 96 bp Feature: gene Location: 296322-297080 bp Feature: domain Description: modA Location: 296349-297066 bp Feature: domain Description: modA Location: 2 96349-2 97066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hypoth_Ymh (pfam09509), AAA_15 (pfam13175), RVT-Retrons, PRK00784 (cobyric acid synthase), modA (TIGR01256)