myRT

myRT report for GCA_008084645.1_ASM808464v1

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Seq: VSGM01000029.1 Vibrio cholerae strain N2752 NODE_152, whole genome shotgun sequence (17468 bp)
Overview 1 RT 1: 15229-17102 bp Neighborhood of RT #1 [15229, 17401] PRK03624 RVT-UG2 Feature: gene Location: 15229-15645 bp Feature: domain Description: PRK03624 Location: 15241-15610 bp Feature: domain Description: PRK03624 Location: 1 5241 -1 561 0 bp Feature: gene Location: 15862-15999 bp Feature: gene Location: 16118-17401 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 16319-17102 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 631 9-1 71 02 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03624 (putative acetyltransferase; Provisional), RVT-UG2

Seq: VSGM01000003.1 Vibrio cholerae strain N2752 NODE_4, whole genome shotgun sequence (214786 bp)
Overview 1 RT 1: 115202-118652 bp Neighborhood of RT #1 [115202, 118652] DUF2188 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 115202-115762 bp Feature: gene Location: 116087-116314 bp Feature: domain Description: DUF2188 Location: 116102-116279 bp Feature: domain Description: DUF2 188 Location: 116102 -1162 79 bp Feature: gene Location: 116396-118081 bp Feature: domain Description: RVT_N Location: 116468-116711 bp Feature: domain Description: RVT_N Location: 116468-116711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116756-117401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116756-117401 bp Feature: domain Description: GIIM Note: maturase Location: 117452-117686 bp Feature: domain Description: GIIM Note: maturase Location: 117452 -117686 bp Feature: domain Description: HNHc Note: nucleases Location: 117899-118055 bp Feature: domain Description: HNHc Note: nucleases Location: 117899-118055 bp Feature: gene Location: 118143-118373 bp Feature: gene Location: 118470-118652 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: VSGM01000004.1 Vibrio cholerae strain N2752 NODE_5, whole genome shotgun sequence (502889 bp)
Overview 1 RT 1: 367314-370402 bp Neighborhood of RT #1 [367314, 370413] PHA00652 PHA00653 RVT-DGRs PHA00650 PleD Feature: gene Location: 367314-367676 bp Feature: domain Description: PHA00652 Location: 367329-367671 bp Feature: domain Description: PHA00652 Location: 3 673 29-3 67671 bp Feature: gene Location: 367684-367839 bp Feature: domain Description: PHA00653 Location: 367702-367822 bp Feature: domain Description: PHA00653 Location: 3 67702-3 67822 bp Feature: gene Location: 367949-368959 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 368171-368765 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 68171-3 68765 bp Feature: gene Location: 368938-369171 bp Feature: domain Description: PHA00650 Location: 369025-369163 bp Feature: domain Description: PHA00650 Location: 3 69025-3 69163 bp Feature: gene Location: 369397-370413 bp Feature: domain Description: PleD Location: 369859-370402 bp Feature: domain Description: PleD Location: 3 69859-3 70402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00652 (hypothetical protein), PHA00653 (mtd;major tropism determinant), RVT-DGRs, PHA00650 (hypothetical protein), PleD (COG3706)