myRT

myRT report for GCA_008084695.1_ASM808469v1

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Seq: VSGC01000012.1 Vibrio cholerae strain N2736 NODE_15, whole genome shotgun sequence (135376 bp)
Overview 1 RT 1: 23691-27259 bp Neighborhood of RT #1 [23691, 27259] DUF2188 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 23691-24251 bp Feature: gene Location: 24578-24799 bp Feature: domain Description: DUF2188 Location: 24593-24770 bp Feature: domain Description: DUF21 88 Location: 24593-24770 bp Feature: gene Location: 24985-26685 bp Feature: RT Description: RVT_N Location: 25057-25300 bp Feature: RT Description: RVT_N Location: 25057-25300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25345-25990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25345-25990 bp Feature: domain Description: GIIM Note: maturase Location: 26041-26275 bp Feature: domain Description: GIIM Note: maturase Location: 26041 -26275 bp Feature: domain Description: HNHc Note: nucleases Location: 26491-26653 bp Feature: domain Description: HNHc Note: nucleases Location: 26491 -26653 bp Feature: gene Location: 26845-27015 bp Feature: gene Location: 27098-27259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: VSGC01000019.1 Vibrio cholerae strain N2736 NODE_23, whole genome shotgun sequence (1893 bp)
Overview 1 RT 1: 37-1892 bp Neighborhood of RT #1 [37, 1892] RVT-GII GIIM Feature: gene Location: 37-1347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253-868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 53-868 bp Feature: domain Description: GIIM Note: maturase Location: 916-1120 bp Feature: domain Description: GIIM Note: maturase Location: 916-112 0 bp Feature: gene Location: 1653-1892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VSGC01000035.1 Vibrio cholerae strain N2736 NODE_51, whole genome shotgun sequence (11759 bp)
Overview 1 RT 1: 2550-6552 bp Neighborhood of RT #1 [2550, 6686] Avd_like DUF1566 RVT-DGRs DUF1566 TraF-like Feature: gene Location: 2550-2981 bp Feature: domain Description: Avd_like Location: 2577-2889 bp Feature: domain Description: Avd_like Location: 2577-2889 bp Feature: gene Location: 3018-3185 bp Feature: domain Description: DUF1566 Location: 3045-3174 bp Feature: domain Description: DUF1566 Location: 3 045-3 174 bp Feature: gene Location: 3124-4707 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3370-4081 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 3 70-4081 bp Feature: gene Location: 4734-5273 bp Feature: domain Description: DUF1566 Location: 4872-5262 bp Feature: domain Description: DUF1566 Location: 4872-5262 bp Feature: gene Location: 5742-6686 bp Feature: domain Description: TraF-like Location: 5772-6552 bp Feature: domain Description: TraF-like Location: 5772-6552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), DUF1566 (pfam07603), RVT-DGRs, TraF-like (TIGR02740)