myRT

myRT report for GCA_008085485.1_ASM808548v1

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Seq: VSGK01000057.1 Vibrio cholerae strain N2750 NODE_143, whole genome shotgun sequence (77888 bp)
Overview 1 RT 1: 47158-50610 bp Neighborhood of RT #1 [47158, 50610] DUF2188 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 47158-47718 bp Feature: gene Location: 48042-48269 bp Feature: domain Description: DUF2188 Location: 48057-48234 bp Feature: domain Description: DUF21 88 Location: 48057-48234 bp Feature: gene Location: 48363-50036 bp Feature: RT Description: RVT_N Location: 48435-48678 bp Feature: RT Description: RVT_N Location: 48435-48678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48723-49368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48723-49368 bp Feature: domain Description: GIIM Note: maturase Location: 49419-49653 bp Feature: domain Description: GIIM Note: maturase Location: 4941 9-49653 bp Feature: domain Description: HNHc Note: nucleases Location: 49869-50031 bp Feature: domain Description: HNHc Note: nucleases Location: 49869-50031 bp Feature: gene Location: 50196-50366 bp Feature: gene Location: 50449-50610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: VSGK01000033.1 Vibrio cholerae strain N2750 NODE_48, whole genome shotgun sequence (128382 bp)
Overview 1 RT 1: 7140-10460 bp Neighborhood of RT #1 [7140, 10480] PHA00652 PHA00653 RVT-DGRs AroC Feature: gene Location: 7140-7502 bp Feature: domain Description: PHA00652 Location: 7155-7497 bp Feature: domain Description: PHA00652 Location: 7155-7497 bp Feature: gene Location: 7510-7665 bp Feature: domain Description: PHA00653 Location: 7528-7648 bp Feature: domain Description: PHA00653 Location: 752 8-7648 bp Feature: gene Location: 7775-8785 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7997-8591 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7997-8591 bp Feature: gene Location: 8764-8997 bp Feature: gene Location: 9395-10480 bp Feature: domain Description: AroC Location: 9404-10460 bp Feature: domain Description: AroC Location: 9404-10460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00652 (hypothetical protein), PHA00653 (mtd;major tropism determinant), RVT-DGRs, AroC (COG0082)