myRT

myRT report for GCA_008085495.1_ASM808549v1

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Seq: VSGJ01000013.1 Vibrio cholerae strain N2749 NODE_16, whole genome shotgun sequence (160434 bp)
Overview 1 RT 1: 48988-52556 bp Neighborhood of RT #1 [48988, 52556] DUF2188 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 48988-49548 bp Feature: gene Location: 49875-50096 bp Feature: domain Description: DUF2188 Location: 49890-50067 bp Feature: domain Description: DUF21 88 Location: 49890-50067 bp Feature: gene Location: 50282-51982 bp Feature: RT Description: RVT_N Location: 50354-50597 bp Feature: RT Description: RVT_N Location: 50354-50597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50642-51287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50642-51 287 bp Feature: domain Description: GIIM Note: maturase Location: 51338-51572 bp Feature: domain Description: GIIM Note: maturase Location: 51 338-51 572 bp Feature: domain Description: HNHc Note: nucleases Location: 51788-51950 bp Feature: domain Description: HNHc Note: nucleases Location: 51 788-51 950 bp Feature: gene Location: 52142-52312 bp Feature: gene Location: 52395-52556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: VSGJ01000055.1 Vibrio cholerae strain N2749 NODE_167, whole genome shotgun sequence (520788 bp)
Overview 1 RT 1: 289627-297071 bp Neighborhood of RT #1 [289627, 297085] Hypoth_Ymh AAA_15 AAA_15 RVT-Retrons PRK00784 modA Feature: gene Location: 289627-290427 bp Feature: domain Description: Hypoth_Ymh Location: 290047-290407 bp Feature: domain Description: Hypoth_Ymh Location: 2 90047-2 90407 bp Feature: gene Location: 290575-292692 bp Feature: domain Description: AAA_15 Location: 290578-290995 bp Feature: domain Description: AAA_15 Location: 2 90578-2 90995 bp Feature: domain Description: AAA_15 Location: 291130-291559 bp Feature: domain Description: AAA_15 Location: 2 91130-2 91559 bp Feature: gene Location: 292868-293968 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 293012-293567 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 93012 -2 93567 bp Feature: gene Location: 294771-296315 bp Feature: domain Description: PRK00784 Location: 294867-296301 bp Feature: domain Description: PRK00784 Location: 2 94867-2 96301 bp Feature: gene Location: 296327-297085 bp Feature: domain Description: modA Location: 296354-297071 bp Feature: domain Description: modA Location: 2 96354-2 97071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hypoth_Ymh (pfam09509), AAA_15 (pfam13175), RVT-Retrons, PRK00784 (cobyric acid synthase), modA (TIGR01256)