myRT

myRT report for GCA_008086145.1_ASM808614v1

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Seq: VSIZ01000002.1 Pseudomonas aeruginosa strain UMB2738 NODE_2_length_276351_cov_6.676346, whole genome shotgun sequence (276351 bp)
Overview 1 RT 1: 193848-204581 bp Neighborhood of RT #1 [193848, 204583] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 193848-194183 bp Feature: domain Description: NERD Location: 193947-194118 bp Feature: domain Description: NERD Location: 1 93947-1 941 1 8 bp Feature: gene Location: 194276-195397 bp Feature: domain Description: COG3177 Location: 194294-195386 bp Feature: domain Description: COG31 77 Location: 1 94294-1 95386 bp Feature: gene Location: 196120-197805 bp Feature: RT Description: RVT_N Location: 196177-196417 bp Feature: RT Description: RVT_N Location: 1 961 77-1 9641 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196465-197101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 96465-1 971 01 bp Feature: domain Description: GIIM Note: maturase Location: 197155-197386 bp Feature: domain Description: GIIM Note: maturase Location: 1 971 55-1 97386 bp Feature: domain Description: HNH Note: nucleases Location: 197638-197776 bp Feature: domain Description: HNH Note: nucleases Location: 1 97638-1 97776 bp Feature: gene Location: 198886-202623 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 198994-199651 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 98994-1 99651 bp Feature: domain Description: PRK09776 Location: 199864-200335 bp Feature: domain Description: PRK09776 Location: 1 99864-200335 bp Feature: domain Description: PAS Location: 200380-200917 bp Feature: domain Description: PAS Location: 200380-20091 7 bp Feature: domain Description: PRK10060 Location: 200926-202573 bp Feature: domain Description: PRK1 0060 Location: 200926-202573 bp Feature: gene Location: 202730-204583 bp Feature: domain Description: PRK05658 Location: 202742-204581 bp Feature: domain Description: PRK05658 Location: 202742-204581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)