myRT

myRT report for GCA_008086695.1_ASM808669v1

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Seq: SRKB01000008.1 Bacteroides fragilis strain 143 Contig0008, whole genome shotgun sequence (89140 bp)
Overview 1 RT 1: 78291-87627 bp Neighborhood of RT #1 [78291, 88433] DUF1896 COG4646 RVT_N RVT-GII GIIM DUF4116 DUF4116 DUF4116 DUF4116 Feature: gene Location: 78291-78728 bp Feature: domain Description: DUF1896 Location: 78312-78726 bp Feature: domain Description: DUF1 896 Location: 7831 2-78726 bp Feature: gene Location: 78718-82857 bp Feature: domain Description: COG4646 Location: 80407-82474 bp Feature: domain Description: COG4646 Location: 80407-82474 bp Feature: gene Location: 83514-85181 bp Feature: RT Description: RVT_N Location: 83568-83811 bp Feature: RT Description: RVT_N Location: 83568-8381 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83856-84504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83856-84504 bp Feature: domain Description: GIIM Note: maturase Location: 84558-84789 bp Feature: domain Description: GIIM Note: maturase Location: 84558-84789 bp Feature: gene Location: 85135-86664 bp Feature: gene Location: 86697-88433 bp Feature: domain Description: DUF4116 Location: 87045-87162 bp Feature: domain Description: DUF41 1 6 Location: 87045-871 62 bp Feature: domain Description: DUF4116 Location: 87180-87291 bp Feature: domain Description: DUF41 1 6 Location: 871 80-87291 bp Feature: domain Description: DUF4116 Location: 87312-87360 bp Feature: domain Description: DUF41 1 6 Location: 8731 2-87360 bp Feature: domain Description: DUF4116 Location: 87582-87627 bp Feature: domain Description: DUF41 1 6 Location: 87582-87627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4116 (pfam13475)

Seq: SRKB01000010.1 Bacteroides fragilis strain 143 Contig0010, whole genome shotgun sequence (457760 bp)
Overview 1 RT 1: 132292-134308 bp Neighborhood of RT #1 [132292, 134308] RVT-GII HTH_28 Feature: gene Location: 132292-132654 bp Feature: gene Location: 132658-132867 bp Feature: gene Location: 132897-133094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132900-133092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 900-133092 bp Feature: gene Location: 133215-133505 bp Feature: domain Description: HTH_28 Location: 133239-133386 bp Feature: domain Description: HTH_2 8 Location: 1332 39-133386 bp Feature: gene Location: 133934-134308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518)

Seq: SRKB01000039.1 Bacteroides fragilis strain 143 NODE_7_length_351711_cov_46.192341, whole genome shotgun sequence (351783 bp)
Overview 1 RT 1: 239746-248711 bp Neighborhood of RT #1 [239746, 248713] RNase_Z rpsA RVT-Retrons GlnA3 Feature: gene Location: 239746-240660 bp Feature: domain Description: RNase_Z Location: 239761-240652 bp Feature: domain Description: RNase_Z Location: 23 9761-240652 bp Feature: gene Location: 240810-242603 bp Feature: domain Description: rpsA Location: 240888-242496 bp Feature: domain Description: rpsA Location: 240888-242496 bp Feature: gene Location: 242745-243857 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 243060-243609 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 243 060-243 609 bp Feature: gene Location: 244064-246283 bp Feature: gene Location: 246524-248713 bp Feature: domain Description: GlnA3 Location: 246599-248711 bp Feature: domain Description: GlnA3 Location: 246599-248711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968)