myRT

myRT report for GCA_008107405.1_ASM810740v1

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Seq: VSRK01000199.1 Klebsiella pneumoniae strain C43, whole genome shotgun sequence (1150 bp)
Overview 1 RT 1: 3-1054 bp Neighborhood of RT #1 [3, 1054] RVT-GII Feature: gene Location: 3-767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405-765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405-765 bp Feature: gene Location: 821-1054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VSRK01000217.1 Klebsiella pneumoniae strain C43, whole genome shotgun sequence (776 bp)
Overview 1 RT 1: 59-383 bp Neighborhood of RT #1 [59, 775] RVT-GII Feature: gene Location: 59-775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62-383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 -383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VSRK01000023.1 Klebsiella pneumoniae strain C43, whole genome shotgun sequence (66042 bp)
Overview 1 RT 1: 6272-10131 bp Neighborhood of RT #1 [6272, 10131] HHA RVT-GII INT_Cre_C Feature: gene Location: 6272-6523 bp Feature: domain Description: HHA Location: 6320-6503 bp Feature: domain Description: HHA Location: 63 20-6503 bp Feature: gene Location: 6613-7014 bp Feature: gene Location: 7039-8526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7444-8134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7444-813 4 bp Feature: gene Location: 8612-9748 bp Feature: domain Description: INT_Cre_C Location: 9035-9689 bp Feature: domain Description: INT_Cre_C Location: 903 5-9689 bp Feature: gene Location: 9814-10131 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HHA (pfam05321), RVT-GII, INT_Cre_C (cd00799)

Seq: VSRK01000004.1 Klebsiella pneumoniae strain C43, whole genome shotgun sequence (134532 bp)
Overview 1 RT 1: 93259-99987 bp Neighborhood of RT #1 [93259, 100028] HTH_XRE RVT-Retrons COG3440 Feature: gene Location: 93259-93585 bp Feature: gene Location: 93637-93927 bp Feature: domain Description: HTH_XRE Location: 93649-93814 bp Feature: domain Description: HTH_XRE Location: 9364 9-93814 bp Feature: gene Location: 93962-94879 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 94058-94625 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 94 058-94 625 bp Feature: gene Location: 94920-98771 bp Feature: gene Location: 98970-100028 bp Feature: domain Description: COG3440 Location: 99600-99987 bp Feature: domain Description: COG34 4 0 Location: 99600-99987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, COG3440 (Predicted restriction endonuclease )

Seq: VSRK01000047.1 Klebsiella pneumoniae strain C43, whole genome shotgun sequence (40745 bp)
Overview 1 RT 1: 29014-36126 bp Neighborhood of RT #1 [29014, 37259] AAA_13 AAA_13 COG0610 RVT-Retrons AAA_15 AAA_15 Feature: gene Location: 29014-30192 bp Feature: domain Description: AAA_13 Location: 29107-29281 bp Feature: domain Description: AAA_13 Location: 29107-29281 bp Feature: domain Description: AAA_13 Location: 29503-30073 bp Feature: domain Description: AAA_13 Location: 295 03-30073 bp Feature: gene Location: 30185-33304 bp Feature: domain Description: COG0610 Location: 30269-33281 bp Feature: domain Description: COG0610 Location: 30269-33281 bp Feature: gene Location: 33846-34409 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33849-34014 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33849-34014 bp Feature: gene Location: 34749-35009 bp Feature: gene Location: 35118-37259 bp Feature: domain Description: AAA_15 Location: 35145-35562 bp Feature: domain Description: AAA_15 Location: 35 145 -35 5 62 bp Feature: domain Description: AAA_15 Location: 35700-36126 bp Feature: domain Description: AAA_15 Location: 35 700-36126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_13 (pfam13166), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-Retrons, AAA_15 (pfam13175)