myRT

myRT report for GCA_008107585.1_ASM810758v1

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Seq: VSLA01000015.1 Acetobacterium wieringae strain JM Acetobacterium_CO_14, whole genome shotgun sequence (20908 bp)
Overview 1 RT 1: 14325-18564 bp Neighborhood of RT #1 [14325, 18564] AbiEi_4 AbiEii RVT-GII DUF815 Feature: gene Location: 14325-14936 bp Feature: domain Description: AbiEi_4 Location: 14358-14499 bp Feature: domain Description: AbiEi_4 Location: 1 4358-1 4499 bp Feature: gene Location: 14933-15787 bp Feature: domain Description: AbiEii Location: 15035-15716 bp Feature: domain Description: AbiEii Location: 1 5035-1 571 6 bp Feature: gene Location: 16023-16586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16161-16545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 61 -1 6545 bp Feature: gene Location: 16794-18101 bp Feature: domain Description: DUF815 Location: 17352-18090 bp Feature: domain Description: DUF81 5 Location: 1 7352-1 8090 bp Feature: gene Location: 18337-18564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEi_4 (pfam13338), AbiEii (pfam08843), RVT-GII, DUF815 (pfam05673)

Seq: VSLA01000016.1 Acetobacterium wieringae strain JM Acetobacterium_CO_15, whole genome shotgun sequence (9894 bp)
Overview 1 RT 1: 419-6350 bp Neighborhood of RT #1 [419, 7171] ZntA RVT-GII GIIM Tn7_Tnp_TnsA_N rve Feature: gene Location: 419-2305 bp Feature: domain Description: ZntA Location: 446-2291 bp Feature: domain Description: ZntA Location: 446-2 2 91 bp Feature: gene Location: 2675-2815 bp Feature: gene Location: 2903-4318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3257-3872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 57-3872 bp Feature: domain Description: GIIM Note: maturase Location: 3926-4157 bp Feature: domain Description: GIIM Note: maturase Location: 392 6-4157 bp Feature: gene Location: 4603-5280 bp Feature: domain Description: Tn7_Tnp_TnsA_N Location: 4750-4993 bp Feature: domain Description: Tn7_Tnp_TnsA_N Location: 4750-4993 bp Feature: gene Location: 5261-7171 bp Feature: domain Description: rve Location: 5918-6350 bp Feature: domain Description: rve Location: 5918-6350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ZntA (COG2217), rve (pfam00665)

Seq: VSLA01000025.1 Acetobacterium wieringae strain JM Acetobacterium_CO_25, whole genome shotgun sequence (306008 bp)
Overview 1 RT 1: 164559-170469 bp Neighborhood of RT #1 [164559, 170469] IscU GGGtGRT RVT-Retrons Feature: gene Location: 164559-165251 bp Feature: domain Description: IscU Location: 164652-165069 bp Feature: domain Description: IscU Location: 164652-165069 bp Feature: gene Location: 165263-166261 bp Feature: domain Description: GGGtGRT Location: 165275-166253 bp Feature: domain Description: GGGtGRT Location: 165275-166253 bp Feature: gene Location: 166519-168519 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 167680-168208 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 167680-168208 bp Feature: gene Location: 168686-169444 bp Feature: gene Location: 169639-170469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IscU (COG0822), GGGtGRT (pfam14057), RVT-Retrons

Seq: VSLA01000004.1 Acetobacterium wieringae strain JM Acetobacterium_CO_4, whole genome shotgun sequence (155089 bp)
Overview 1 RT 1: 116664-123034 bp Neighborhood of RT #1 [116664, 123048] dCache_1 dCache_1 AraC AraC_E_bind RVT-GII MdlB Feature: gene Location: 116664-118238 bp Feature: domain Description: dCache_1 Location: 116778-117333 bp Feature: domain Description: dCache_1 Location: 116778-117333 bp Feature: domain Description: dCache_1 Location: 117492-118074 bp Feature: domain Description: dCache_1 Location: 1174 92-118074 bp Feature: gene Location: 118357-119268 bp Feature: domain Description: AraC Location: 118387-118684 bp Feature: domain Description: AraC Location: 118387-118684 bp Feature: domain Description: AraC_E_bind Location: 118906-119134 bp Feature: domain Description: AraC_E_bind Location: 118906-119134 bp Feature: gene Location: 119411-120676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119660-120323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119660-120323 bp Feature: gene Location: 120961-121158 bp Feature: gene Location: 121261-123048 bp Feature: domain Description: MdlB Location: 121300-123034 bp Feature: domain Description: MdlB Location: 121300-123034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dCache_1 (pfam02743), AraC (COG2207), AraC_E_bind (smart00871), RVT-GII, MdlB (COG1132)