myRT

myRT report for GCA_008119785.1_ASM811978v1

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Seq: VSFA01000208.1 Micromonospora sp. MP36, whole genome shotgun sequence (4807 bp)
Overview 1 RT 1: 1183-3978 bp Neighborhood of RT #1 [1183, 4061] DDE_5 RVT-GII GIIM Feature: gene Location: 1183-1311 bp Feature: gene Location: 1402-2607 bp Feature: domain Description: DDE_5 Location: 1528-2320 bp Feature: domain Description: DDE_5 Location: 1 528-2320 bp Feature: gene Location: 2805-4061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3021-3672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3021 -3672 bp Feature: domain Description: GIIM Note: maturase Location: 3756-3978 bp Feature: domain Description: GIIM Note: maturase Location: 3756-3978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT-GII, GIIM (pfam08388)

Seq: VSFA01000092.1 Micromonospora sp. MP36, whole genome shotgun sequence (28628 bp)
Overview 1 RT 1: 785-2840 bp Neighborhood of RT #1 [785, 2840] RVT-GII Feature: gene Location: 785-2080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1019-1709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1019-1709 bp Feature: gene Location: 2136-2375 bp Feature: gene Location: 2700-2840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VSFA01000095.1 Micromonospora sp. MP36, whole genome shotgun sequence (27869 bp)
Overview 1 RT 1: 341-3139 bp 2 RT 2: 18669-22971 bp Neighborhood of RT #1 [341, 3139] RVT-GII GIIM PHA02517 Neighborhood of RT #2 [18669, 23639] PRK06063 PRK06063 RVT-Retrons RpoE zf-HC2 Feature: gene Location: 341-538 bp Feature: gene Location: 640-1893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 856-1516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 856-1516 bp Feature: domain Description: GIIM Note: maturase Location: 1594-1801 bp Feature: domain Description: GIIM Note: maturase Location: 1594-1801 bp Feature: gene Location: 2504-2980 bp Feature: domain Description: PHA02517 Location: 2516-2945 bp Feature: domain Description: PHA02517 Location: 2516-2945 bp Feature: gene Location: 2996-3139 bp Feature: gene Location: 18669-19904 bp Feature: domain Description: PRK06063 Location: 18675-19227 bp Feature: domain Description: PRK06063 Location: 18675-19227 bp Feature: domain Description: PRK06063 Location: 19647-19881 bp Feature: domain Description: PRK06063 Location: 19647-19881 bp Feature: gene Location: 19918-20619 bp Feature: gene Location: 20683-22218 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21325-21946 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 213 25-21946 bp Feature: gene Location: 22327-22860 bp Feature: domain Description: RpoE Location: 22357-22855 bp Feature: domain Description: RpoE Location: 223 57-22855 bp Feature: gene Location: 22857-23639 bp Feature: domain Description: zf-HC2 Location: 22890-22971 bp Feature: domain Description: zf-HC2 Location: 22890-22971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK06063 (DEDDh family exonuclease), RVT-Retrons, RpoE (COG3343), zf-HC2 (pfam13490)