myRT

myRT report for GCA_008123415.1_ASM812341v1

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Seq: VSTF01000017.1 [Eubacterium] rectale strain T3WBe13 NODE_17_length_54206_cov_68.1631, whole genome shotgun sequence (54206 bp)
Overview 1 RT 1: 3-1618 bp Neighborhood of RT #1 [3, 1618] RVT-GII GIIM quorum_AgrD Feature: gene Location: 3-803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-351 bp Feature: domain Description: GIIM Note: maturase Location: 408-630 bp Feature: domain Description: GIIM Note: maturase Location: 408-630 bp Feature: gene Location: 899-1180 bp Feature: domain Description: quorum_AgrD Location: 1070-1175 bp Feature: domain Description: quorum_AgrD Location: 1 070-1 1 75 bp Feature: gene Location: 1199-1618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), quorum_AgrD (TIGR04223)

Seq: VSTF01000002.1 [Eubacterium] rectale strain T3WBe13 NODE_2_length_345176_cov_46.7354, whole genome shotgun sequence (345176 bp)
Overview 1 RT 1: 192755-205439 bp 2 RT 2: 240050-243349 bp Neighborhood of RT #1 [192755, 205453] DUF3848 DUF3849 COG4646 KOG1000 RVT-GII HNHc YtxK COG4646 TTRAP Neighborhood of RT #2 [240050, 243349] Phage_XkdX RVT-DGRs Feature: gene Location: 192755-193573 bp Feature: domain Description: DUF3848 Location: 192773-193052 bp Feature: domain Description: DUF3848 Location: 192 773-193052 bp Feature: domain Description: DUF3849 Location: 193088-193451 bp Feature: domain Description: DUF3849 Location: 193088-193451 bp Feature: gene Location: 193575-196082 bp Feature: domain Description: COG4646 Location: 193578-194640 bp Feature: domain Description: COG4646 Location: 193578-194640 bp Feature: domain Description: KOG1000 Location: 195078-195282 bp Feature: domain Description: KOG1000 Location: 195078-1952 82 bp Feature: gene Location: 196253-198136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196571-197300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196571-197300 bp Feature: domain Description: HNHc Note: nucleases Location: 197852-198020 bp Feature: domain Description: HNHc Note: nucleases Location: 197852 -19802 0 bp Feature: gene Location: 198869-205207 bp Feature: domain Description: YtxK Location: 202898-203615 bp Feature: domain Description: YtxK Location: 2 02 898-2 03615 bp Feature: domain Description: COG4646 Location: 203684-205199 bp Feature: domain Description: COG4646 Location: 2 03684-2 05199 bp Feature: gene Location: 205238-205453 bp Feature: domain Description: TTRAP Location: 205250-205439 bp Feature: domain Description: TTRAP Location: 2 052 50-2 05439 bp Feature: gene Location: 240050-240202 bp Feature: domain Description: Phage_XkdX Location: 240071-240182 bp Feature: domain Description: Phage_XkdX Location: 2 40071-2 40182 bp Feature: gene Location: 240204-240518 bp Feature: gene Location: 240355-241653 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 240607-241312 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 40607-2 41312 bp Feature: gene Location: 241736-241930 bp Feature: gene Location: 242111-243349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3848 (pfam12959), DUF3849 (pfam12960), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, HNHc (smart00507), YtxK (COG0827), TTRAP (pfam14203), Phage_XkdX (pfam09693), RVT-DGRs

Seq: VSTF01000003.1 [Eubacterium] rectale strain T3WBe13 NODE_3_length_259022_cov_71.6298, whole genome shotgun sequence (259022 bp)
Overview 1 RT 1: 187281-192227 bp Neighborhood of RT #1 [187281, 192652] RVT-DGRs DUF3751 DUF2313 Feature: gene Location: 187281-187595 bp Feature: gene Location: 187652-187828 bp Feature: gene Location: 188199-189449 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 188394-189237 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1883 94-18923 7 bp Feature: gene Location: 189955-191760 bp Feature: domain Description: DUF3751 Location: 189976-190408 bp Feature: domain Description: DUF3 751 Location: 189976-190408 bp Feature: gene Location: 191780-192652 bp Feature: domain Description: DUF2313 Location: 191801-192227 bp Feature: domain Description: DUF23 13 Location: 191801-192227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF3751 (pfam12571), DUF2313 (pfam10076)

Seq: VSTF01000006.1 [Eubacterium] rectale strain T3WBe13 NODE_6_length_173233_cov_46.7277, whole genome shotgun sequence (173233 bp)
Overview 1 RT 1: 3-3623 bp Neighborhood of RT #1 [3, 3634] RVT-GII GIIM GH43_GsAbnA-like GH43_C COG3940 Feature: gene Location: 3-803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-351 bp Feature: domain Description: GIIM Note: maturase Location: 408-618 bp Feature: domain Description: GIIM Note: maturase Location: 4 08-618 bp Feature: gene Location: 1067-2605 bp Feature: domain Description: GH43_GsAbnA-like Location: 1217-2249 bp Feature: domain Description: GH4 3_GsAbnA-like Location: 1217-224 9 bp Feature: domain Description: GH43_C Location: 2276-2591 bp Feature: domain Description: GH4 3_C Location: 2276-2591 bp Feature: gene Location: 2687-3634 bp Feature: domain Description: COG3940 Location: 2699-3623 bp Feature: domain Description: COG394 0 Location: 2699-3623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GH43_GsAbnA-like (cd18832), GH43_C (pfam16369), COG3940 (Beta-xylosidase, GH43 family ), RVT-GII, GIIM (pfam08388)