myRT

myRT report for GCA_008123425.1_ASM812342v1

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Seq: VSSS01000002.1 Bradyrhizobium rifense strain CTAW71 CTAW71_S1_R1__contig_2, whole genome shotgun sequence (67875 bp)
Overview 1 RT 1: 65070-66771 bp Neighborhood of RT #1 [65070, 67034] RVT-UG20 Feature: gene Location: 65070-65420 bp Feature: gene Location: 65937-66086 bp Feature: gene Location: 66075-67034 bp Ori: TYM00151.1 Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 66273-66771 bp Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 66273-66771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG20

Seq: VSSS01000126.1 Bradyrhizobium rifense strain CTAW71 CTAW71_S1_R1__contig_127, whole genome shotgun sequence (10997 bp)
Overview 1 RT 1: 5300-10997 bp Neighborhood of RT #1 [5300, 10997] Na_H_antiport_1 MhpC AcyC RVT-GII GIIM Feature: gene Location: 5300-6547 bp Ori: TYL81739.1 Gene: nhaA Feature: domain Description: Na_H_antiport_1 Location: 5393-6500 bp Feature: domain Description: Na_H_antiport_1 Location: 5393-6500 bp Feature: gene Location: 7369-8583 bp Ori: TYL81740.1 Feature: domain Description: MhpC Location: 7468-8212 bp Feature: domain Description: MhpC Location: 7468-82 12 bp Feature: domain Description: AcyC Location: 8242-8581 bp Feature: domain Description: AcyC Location: 82 42 -8581 bp Feature: gene Location: 8749-10077 bp Ori: TYL81741.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9043-9700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9043-9700 bp Feature: domain Description: GIIM Note: maturase Location: 9769-9982 bp Feature: domain Description: GIIM Note: maturase Location: 9769-9982 bp Feature: gene Location: 10763-10997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Na_H_antiport_1 (pfam06965), MhpC (COG0596), AcyC (COG2114), RVT-GII, GIIM (pfam08388)

Seq: VSSS01000062.1 Bradyrhizobium rifense strain CTAW71 CTAW71_S1_R1__contig_63, whole genome shotgun sequence (114628 bp)
Overview 1 RT 1: 7919-14072 bp Neighborhood of RT #1 [7919, 14072] KOG4059 RVT-UG20 Feature: gene Location: 7919-9409 bp Feature: gene Location: 9488-10936 bp Ori: TYL89094.1 Feature: domain Description: KOG4059 Location: 10469-10892 bp Feature: domain Description: KOG4059 Location: 10469-10892 bp Feature: gene Location: 11121-12734 bp Ori: TYL89095.1 Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 11493-11991 bp Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 11493 -11991 bp Feature: gene Location: 13024-13866 bp Feature: gene Location: 13872-14072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG4059 (KOG4059, Uncharacterized conserved protein ), RVT-UG20

Seq: VSSS01000052.1 Bradyrhizobium rifense strain CTAW71 CTAW71_S1_R1__contig_53, whole genome shotgun sequence (73601 bp)
Overview 1 RT 1: 3405-11066 bp Neighborhood of RT #1 [3405, 11066] SIR2_2 COG2865 Piwi_piwi-like_ProArk RVT-Retrons Trypsin_2 Feature: gene Location: 3405-6161 bp Ori: TYL90386.1 Feature: domain Description: SIR2_2 Location: 3804-4170 bp Feature: domain Description: SIR2_2 Location: 3804 -4 170 bp Feature: domain Description: COG2865 Location: 4383-5208 bp Feature: domain Description: COG2865 Location: 4 383-5208 bp Feature: gene Location: 6151-7653 bp Ori: TYL90326.1 Feature: domain Description: Piwi_piwi-like_ProArk Location: 6190-7603 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 6190-7603 bp Feature: gene Location: 8020-9618 bp Ori: TYL90327.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8179-8776 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8179-8776 bp Feature: domain Description: Trypsin_2 Location: 9136-9538 bp Feature: domain Description: Trypsin_2 Location: 9136-9538 bp Feature: gene Location: 9620-10399 bp Feature: gene Location: 10650-11066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2_2 (pfam13289), COG2865 (Predicted transcriptional regulator, contains HTH domain ), Piwi_piwi-like_ProArk (cd04659), RVT-Retrons, Trypsin_2 (pfam13365)