myRT

myRT report for GCA_008123965.1_ASM812396v1

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Seq: VSTH01000105.1 Bradyrhizobium sp. aSej3 asej3_(paired)_trimmed_(paired)_contig_105, whole genome shotgun sequence (38810 bp)
Overview 1 RT 1: 32714-37007 bp Neighborhood of RT #1 [32714, 37007] Transposase_mut RVT-GII Feature: gene Location: 32714-33913 bp Feature: domain Description: Transposase_mut Location: 32726-33827 bp Feature: domain Description: Transposase_mut Location: 32726-33827 bp Feature: gene Location: 34178-34366 bp Feature: gene Location: 34399-35781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34726-35416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34726-3541 6 bp Feature: gene Location: 36071-36484 bp Feature: gene Location: 36609-37007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_mut (pfam00872), RVT-GII

Seq: VSTH01000110.1 Bradyrhizobium sp. aSej3 asej3_(paired)_trimmed_(paired)_contig_110, whole genome shotgun sequence (18667 bp)
Overview 1 RT 1: 17147-18657 bp Neighborhood of RT #1 [17147, 18659] HTH_21 RVT-GII Feature: gene Location: 17147-17431 bp Feature: domain Description: HTH_21 Location: 17153-17267 bp Feature: domain Description: HTH_2 1 Location: 17153-172 67 bp Feature: gene Location: 17626-17880 bp Feature: gene Location: 18027-18659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18264-18657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182 64-18657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_21 (pfam13276), RVT-GII

Seq: VSTH01000135.1 Bradyrhizobium sp. aSej3 asej3_(paired)_trimmed_(paired)_contig_135, whole genome shotgun sequence (4616 bp)
Overview 1 RT 1: 1-1026 bp Neighborhood of RT #1 [1, 1055] RVT-GII HTH_Tnp_1 TnpB_IS66 Feature: gene Location: 1-300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-160 bp Feature: gene Location: 322-711 bp Feature: domain Description: HTH_Tnp_1 Location: 352-562 bp Feature: domain Description: HTH_Tnp_1 Location: 3 52-562 bp Feature: gene Location: 762-1055 bp Feature: domain Description: TnpB_IS66 Location: 765-1026 bp Feature: domain Description: TnpB_IS66 Location: 765-1026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_Tnp_1 (pfam01527), TnpB_IS66 (pfam05717)

Seq: VSTH01000136.1 Bradyrhizobium sp. aSej3 asej3_(paired)_trimmed_(paired)_contig_136, whole genome shotgun sequence (27152 bp)
Overview 1 RT 1: 168-3309 bp Neighborhood of RT #1 [168, 3320] RVT-GII RVT-GII ectoine_eutD Feature: gene Location: 168-395 bp Feature: gene Location: 785-1102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 947-1100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94 7-1100 bp Feature: gene Location: 1206-1463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1254-1449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1254 -14 4 9 bp Feature: gene Location: 1587-2132 bp Feature: gene Location: 2148-3320 bp Feature: domain Description: ectoine_eutD Location: 2175-3309 bp Feature: domain Description: ectoine_eutD Location: 2175-3309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ectoine_eutD (TIGR02993)

Seq: VSTH01000207.1 Bradyrhizobium sp. aSej3 asej3_(paired)_trimmed_(paired)_contig_207, whole genome shotgun sequence (768 bp)
Overview 1 RT 1: 83-614 bp Neighborhood of RT #1 [83, 766] RVT-GII GIIM Feature: gene Location: 83-766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95-335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95 -335 bp Feature: domain Description: GIIM Note: maturase Location: 383-614 bp Feature: domain Description: GIIM Note: maturase Location: 383-614 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VSTH01000239.1 Bradyrhizobium sp. aSej3 asej3_(paired)_trimmed_(paired)_contig_239, whole genome shotgun sequence (7496 bp)
Overview 1 RT 1: 4375-7478 bp Neighborhood of RT #1 [4375, 7480] PinE Zn_ribbon_recom HTH_17 HTH_17 RVT-GII Feature: gene Location: 4375-4503 bp Feature: gene Location: 4586-6802 bp Feature: domain Description: PinE Location: 4634-5222 bp Feature: domain Description: PinE Location: 46 34-5222 bp Feature: domain Description: Zn_ribbon_recom Location: 5579-5750 bp Feature: domain Description: Zn_ribbon_recom Location: 5579-5750 bp Feature: domain Description: HTH_17 Location: 6461-6587 bp Feature: domain Description: HTH_17 Location: 6 46 1-6 587 bp Feature: domain Description: HTH_17 Location: 6647-6752 bp Feature: domain Description: HTH_17 Location: 6 6 47-6 752 bp Feature: gene Location: 7346-7480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7352-7478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7352-7478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), RVT-GII

Seq: VSTH01000240.1 Bradyrhizobium sp. aSej3 asej3_(paired)_trimmed_(paired)_contig_240, whole genome shotgun sequence (1128 bp)
Overview 1 RT 1: 1-709 bp Neighborhood of RT #1 [1, 708] RVT-GII Feature: gene Location: 1-708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-7 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VSTH01000259.1 Bradyrhizobium sp. aSej3 asej3_(paired)_trimmed_(paired)_contig_259, whole genome shotgun sequence (12424 bp)
Overview 1 RT 1: 17-1375 bp Neighborhood of RT #1 [17, 1419] RVT-GII YgiN COG1661 COG1661 Feature: gene Location: 17-151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23-149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23-149 bp Feature: gene Location: 256-807 bp Feature: domain Description: YgiN Location: 547-757 bp Feature: domain Description: YgiN Location: 547-757 bp Feature: gene Location: 820-1419 bp Feature: domain Description: COG1661 Location: 880-1066 bp Feature: domain Description: COG1661 Location: 8 8 0-1066 bp Feature: domain Description: COG1661 Location: 1210-1375 bp Feature: domain Description: COG1661 Location: 1210-1375 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YgiN (COG1359), COG1661 (Predicted DNA-binding protein with PD1-like DNA-binding motif )

Seq: VSTH01000026.1 Bradyrhizobium sp. aSej3 asej3_(paired)_trimmed_(paired)_contig_26, whole genome shotgun sequence (8071 bp)
Overview 1 RT 1: 5853-7913 bp Neighborhood of RT #1 [5853, 8068] CitE RVT-GII GIIM Feature: gene Location: 5853-6131 bp Feature: gene Location: 6230-7174 bp Feature: domain Description: CitE Location: 6269-7130 bp Feature: domain Description: CitE Location: 6269 -7130 bp Feature: gene Location: 7484-8068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7487-7640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7487-7640 bp Feature: domain Description: GIIM Note: maturase Location: 7688-7913 bp Feature: domain Description: GIIM Note: maturase Location: 7688-79 13 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CitE (COG2301), RVT-GII, GIIM (pfam08388)

Seq: VSTH01000263.1 Bradyrhizobium sp. aSej3 asej3_(paired)_trimmed_(paired)_contig_263, whole genome shotgun sequence (18254 bp)
Overview 1 RT 1: 3235-7001 bp 2 RT 2: 10571-12866 bp Neighborhood of RT #1 [3235, 7001] RVT-GII RVT-GII COG1661 COG1661 Neighborhood of RT #2 [10571, 12866] HTH_Tnp_1 RVT-GII Feature: gene Location: 3235-3585 bp Feature: gene Location: 3603-3767 bp Feature: gene Location: 3804-4361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3846-4011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3846-4011 bp Feature: gene Location: 4645-4893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4762-4891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4762-4891 bp Feature: gene Location: 5862-6392 bp Feature: domain Description: COG1661 Location: 5868-6018 bp Feature: domain Description: COG1661 Location: 5868-6018 bp Feature: domain Description: COG1661 Location: 6195-6351 bp Feature: domain Description: COG1661 Location: 6195-6351 bp Feature: gene Location: 6825-7001 bp Feature: gene Location: 10571-10873 bp Feature: domain Description: HTH_Tnp_1 Location: 10613-10820 bp Feature: domain Description: HTH_Tnp_1 Location: 10 613-10 820 bp Feature: gene Location: 11095-11436 bp Feature: gene Location: 11727-12065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11733-12018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11733-12018 bp Feature: gene Location: 12409-12594 bp Feature: gene Location: 12678-12866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG1661 (Predicted DNA-binding protein with PD1-like DNA-binding motif ), HTH_Tnp_1 (pfam01527)

Seq: VSTH01000264.1 Bradyrhizobium sp. aSej3 asej3_(paired)_trimmed_(paired)_contig_264, whole genome shotgun sequence (4591 bp)
Overview 1 RT 1: 197-4491 bp Neighborhood of RT #1 [197, 4589] PRK07049 RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 197-1480 bp Feature: domain Description: PRK07049 Location: 200-1475 bp Feature: domain Description: PRK07049 Location: 200-1475 bp Feature: gene Location: 1617-1997 bp Feature: gene Location: 2089-3456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2440-3079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2440-3079 bp Feature: domain Description: GIIM Note: maturase Location: 3154-3373 bp Feature: domain Description: GIIM Note: maturase Location: 3154-3373 bp Feature: gene Location: 3945-4589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3957-4209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3957-4209 bp Feature: domain Description: GIIM Note: maturase Location: 4281-4491 bp Feature: domain Description: GIIM Note: maturase Location: 4281-4491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07049 (cystathionine gamma-synthase family protein), RVT-GII, GIIM (pfam08388)

Seq: VSTH01000268.1 Bradyrhizobium sp. aSej3 asej3_(paired)_trimmed_(paired)_contig_268, whole genome shotgun sequence (1318 bp)
Overview 1 RT 1: 598-1306 bp Neighborhood of RT #1 [598, 1308] RVT-GII Feature: gene Location: 598-1308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 886-1306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 886-1306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VSTH01000285.1 Bradyrhizobium sp. aSej3 asej3_(paired)_trimmed_(paired)_contig_285, whole genome shotgun sequence (571 bp)
Overview 1 RT 1: 3-545 bp Neighborhood of RT #1 [3, 568] group_II_RT_mat RVT-GII Feature: gene Location: 3-347 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 66-348 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 66-348 bp Feature: gene Location: 371-568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383-545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383-545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII

Seq: VSTH01000056.1 Bradyrhizobium sp. aSej3 asej3_(paired)_trimmed_(paired)_contig_56, whole genome shotgun sequence (102142 bp)
Overview 1 RT 1: 3829-8389 bp Neighborhood of RT #1 [3829, 8389] trehalose_OtsA RVT-G2L4 Feature: gene Location: 3829-5238 bp Feature: domain Description: trehalose_OtsA Location: 3835-5137 bp Feature: domain Description: trehalose_OtsA Location: 3835-5137 bp Feature: gene Location: 5389-5730 bp Feature: gene Location: 6115-7362 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 6277-6904 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 6277-6904 bp Feature: gene Location: 7477-7920 bp Feature: gene Location: 8114-8389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trehalose_OtsA (TIGR02400), RVT-G2L4

Seq: VSTH01000069.1 Bradyrhizobium sp. aSej3 asej3_(paired)_trimmed_(paired)_contig_69, whole genome shotgun sequence (30551 bp)
Overview 1 RT 1: 28611-30081 bp Neighborhood of RT #1 [28611, 30458] RVT-GII Feature: gene Location: 28611-28748 bp Feature: gene Location: 28650-28976 bp Feature: gene Location: 28983-30458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29391-30081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29391-30081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VSTH01000074.1 Bradyrhizobium sp. aSej3 asej3_(paired)_trimmed_(paired)_contig_74, whole genome shotgun sequence (1927 bp)
Overview 1 RT 1: 89-1475 bp Neighborhood of RT #1 [89, 1906] RVT-GII Feature: gene Location: 89-328 bp Feature: gene Location: 377-1906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785-1475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785-1475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VSTH01000095.1 Bradyrhizobium sp. aSej3 asej3_(paired)_trimmed_(paired)_contig_95, whole genome shotgun sequence (28235 bp)
Overview 1 RT 1: 15056-19933 bp Neighborhood of RT #1 [15056, 19980] mob_myst_A mob_myst_B RVT-Retrons Arm-DNA-bind_3 INT_P4_C Feature: gene Location: 15056-15523 bp Feature: domain Description: mob_myst_A Location: 15068-15518 bp Feature: domain Description: mob_myst_A Location: 15068-15518 bp Feature: gene Location: 15520-16122 bp Feature: domain Description: mob_myst_B Location: 15553-16102 bp Feature: domain Description: mob_myst_B Location: 15553-16102 bp Feature: gene Location: 16214-17227 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16319-16907 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16319-16907 bp Feature: gene Location: 17224-18177 bp Feature: gene Location: 18757-19980 bp Feature: domain Description: Arm-DNA-bind_3 Location: 18778-19036 bp Feature: domain Description: Arm-DNA-bind_3 Location: 18778-19036 bp Feature: domain Description: INT_P4_C Location: 19381-19933 bp Feature: domain Description: INT_P4_C Location: 19381-19933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mob_myst_A (TIGR02612), mob_myst_B (TIGR02613), RVT-Retrons, Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801)