myRT

myRT report for GCA_008131705.1_ASM813170v1

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Seq: MJFW01000030.1 Enterococcus faecium strain ERV34 contig_125, whole genome shotgun sequence (12984 bp)
Overview 1 RT 1: 445-6298 bp Neighborhood of RT #1 [445, 6417] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 445-2139 bp Feature: domain Description: VirB4 Location: 763-1447 bp Feature: domain Description: VirB4 Location: 763-1 447 bp Feature: gene Location: 2407-2640 bp Feature: gene Location: 2827-4704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3142-3880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 42-3880 bp Feature: domain Description: HNHc Note: nucleases Location: 4438-4591 bp Feature: domain Description: HNHc Note: nucleases Location: 4438-4591 bp Feature: gene Location: 4892-5212 bp Feature: gene Location: 5212-6417 bp Feature: domain Description: Glucosaminidase Location: 5488-5884 bp Feature: domain Description: Glucosaminidase Location: 5488-5884 bp Feature: domain Description: Peptidase_M23 Location: 6061-6298 bp Feature: domain Description: Peptidase_M23 Location: 6061 -6298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: MJFW01000071.1 Enterococcus faecium strain ERV34 contig_162, whole genome shotgun sequence (2676 bp)
Overview 1 RT 1: 46-1837 bp Neighborhood of RT #1 [46, 1956] RVT-GII HNHc Feature: gene Location: 46-1956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1117 bp Feature: domain Description: HNHc Note: nucleases Location: 1672-1837 bp Feature: domain Description: HNHc Note: nucleases Location: 1672 -1837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: MJFW01000146.1 Enterococcus faecium strain ERV34 contig_23, whole genome shotgun sequence (45905 bp)
Overview 1 RT 1: 38436-43981 bp Neighborhood of RT #1 [38436, 44007] RelB_DinJ FtsK_SpoIIIE RVT-GII HNHc FtsK dcm Feature: gene Location: 38436-38780 bp Feature: domain Description: RelB_DinJ Location: 38646-38772 bp Feature: domain Description: RelB_DinJ Location: 3 8646-3 8772 bp Feature: gene Location: 38849-39865 bp Feature: domain Description: FtsK_SpoIIIE Location: 39506-39746 bp Feature: domain Description: FtsK_SpoIIIE Location: 3 9506-3 9746 bp Feature: gene Location: 40459-42333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40825-41521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40825-41521 bp Feature: domain Description: HNHc Note: nucleases Location: 42061-42220 bp Feature: domain Description: HNHc Note: nucleases Location: 42061-42220 bp Feature: gene Location: 42435-42815 bp Feature: domain Description: FtsK Location: 42450-42687 bp Feature: domain Description: FtsK Location: 42450-42687 bp Feature: gene Location: 42853-44007 bp Feature: domain Description: dcm Location: 42940-43981 bp Feature: domain Description: dcm Location: 42940-43 981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), RVT-GII, HNHc (smart00507), FtsK (COG1674), dcm (TIGR00675)

Seq: MJFW01000316.1 Enterococcus faecium strain ERV34 contig_59, whole genome shotgun sequence (7225 bp)
Overview 1 RT 1: 2562-6560 bp Neighborhood of RT #1 [2562, 7222] RMtype1_S_SonII-TRD2-CR2_like RMtype1_S_SonII-TRD2-CR2_like HsdM RVT-AbiP2 Feature: gene Location: 2562-3815 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 2826-3177 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 2826-3177 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 3234-3810 bp Feature: domain Description: RMtype1_S_SonII-TRD2-CR2_like Location: 3234 -3810 bp Feature: gene Location: 3808-5430 bp Feature: domain Description: HsdM Location: 3829-5356 bp Feature: domain Description: HsdM Location: 3829-5356 bp Feature: gene Location: 5768-7222 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6095-6560 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6095-6560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_SonII-TRD2-CR2_like (cd17246), HsdM (COG0286), RVT-AbiP2