myRT

myRT report for GCA_008180225.1_ASM818022v1

Download annotations/find similar RTs

Seq: VTAZ01000116.1 Escherichia coli strain 402/19 NODE_116_length_9716_cov_50.2483_ID_231, whole genome shotgun sequence (9716 bp)
Overview 1 RT 1: 2594-6297 bp Neighborhood of RT #1 [2594, 6311] TnpB_IS66 COG3436 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 2594-2941 bp Feature: domain Description: TnpB_IS66 Location: 2621-2912 bp Feature: domain Description: TnpB_IS66 Location: 2621 -291 2 bp Feature: gene Location: 2961-3842 bp Feature: domain Description: COG3436 Location: 3270-3744 bp Feature: domain Description: COG3436 Location: 3270-3744 bp Feature: gene Location: 4404-5510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4506-5160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4506-51 60 bp Feature: domain Description: GIIM Note: maturase Location: 5238-5460 bp Feature: domain Description: GIIM Note: maturase Location: 5238-5460 bp Feature: gene Location: 5653-5799 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5665-5776 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5665-5776 bp Feature: gene Location: 5826-6311 bp Feature: domain Description: COG3547 Location: 5844-6297 bp Feature: domain Description: COG3547 Location: 5844-6297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), COG3436 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: VTAZ01000125.1 Escherichia coli strain 402/19 NODE_125_length_8243_cov_49.9117_ID_249, whole genome shotgun sequence (8243 bp)
Overview 1 RT 1: 5269-8241 bp Neighborhood of RT #1 [5269, 8241] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 5269-5535 bp Feature: gene Location: 5771-5905 bp Feature: gene Location: 6062-7735 bp Feature: domain Description: RVT_N Location: 6110-6353 bp Feature: domain Description: RVT_N Location: 6110-6353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6398-7043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6398-7043 bp Feature: domain Description: GIIM Note: maturase Location: 7097-7328 bp Feature: domain Description: GIIM Note: maturase Location: 7097-732 8 bp Feature: domain Description: HNHc Note: nucleases Location: 7529-7688 bp Feature: domain Description: HNHc Note: nucleases Location: 752 9-7688 bp Feature: gene Location: 7768-7962 bp Feature: gene Location: 8047-8241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: VTAZ01000181.1 Escherichia coli strain 402/19 NODE_181_length_2380_cov_198.018_ID_361, whole genome shotgun sequence (2380 bp)
Overview 1 RT 1: 3-2362 bp Neighborhood of RT #1 [3, 2379] RVT-GII GIIM RVT-GII PHA02517 Feature: gene Location: 3-332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-153 bp Feature: domain Description: GIIM Note: maturase Location: 237-333 bp Feature: domain Description: GIIM Note: maturase Location: 23 7-3 3 3 bp Feature: gene Location: 342-614 bp Feature: gene Location: 631-1758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 1-1588 bp Feature: gene Location: 1771-2379 bp Feature: domain Description: PHA02517 Location: 1777-2362 bp Feature: domain Description: PHA02517 Location: 1777-23 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: VTAZ01000183.1 Escherichia coli strain 402/19 NODE_183_length_2333_cov_42.9866_ID_365, whole genome shotgun sequence (2333 bp)
Overview 1 RT 1: 268-2332 bp Neighborhood of RT #1 [268, 2332] Antirestrict DDE_Tnp_1 RVT-GII RVT-GII Feature: gene Location: 268-693 bp Feature: domain Description: Antirestrict Location: 403-691 bp Feature: domain Description: Antirestrict Location: 4 03-691 bp Feature: gene Location: 712-1365 bp Feature: domain Description: DDE_Tnp_1 Location: 718-1333 bp Feature: domain Description: DDE_Tnp_1 Location: 718-1333 bp Feature: gene Location: 1391-1594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1499-1589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 99-1589 bp Feature: gene Location: 1655-2011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1664-1985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1664 -1985 bp Feature: gene Location: 2105-2332 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), DDE_Tnp_1 (pfam01609), RVT-GII

Seq: VTAZ01000022.1 Escherichia coli strain 402/19 NODE_22_length_80426_cov_93.2068_ID_43, whole genome shotgun sequence (80426 bp)
Overview 1 RT 1: 35947-39827 bp Neighborhood of RT #1 [35947, 39832] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 35947-36663 bp Feature: domain Description: rph Location: 35950-36658 bp Feature: domain Description: rph Location: 35 95 0-3665 8 bp Feature: gene Location: 36714-37370 bp Feature: domain Description: pyrE Location: 36732-37365 bp Feature: domain Description: pyrE Location: 36732-37365 bp Feature: gene Location: 37666-38625 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37801-38350 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37801-3835 0 bp Feature: gene Location: 38671-39267 bp Feature: domain Description: slmA Location: 38677-39253 bp Feature: domain Description: slmA Location: 38677-3925 3 bp Feature: gene Location: 39374-39832 bp Feature: domain Description: dut Location: 39380-39827 bp Feature: domain Description: dut Location: 39380-39827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: VTAZ01000077.1 Escherichia coli strain 402/19 NODE_77_length_20567_cov_168.676_ID_153, whole genome shotgun sequence (20567 bp)
Overview 1 RT 1: 2-4395 bp Neighborhood of RT #1 [2, 4439] RVT-UG5 PRK09692 Feature: gene Location: 2-271 bp Feature: gene Location: 351-2255 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 357-516 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 357-516 bp Feature: gene Location: 2543-3091 bp Feature: gene Location: 3183-4439 bp Feature: domain Description: PRK09692 Location: 3192-4395 bp Feature: domain Description: PRK096 92 Location: 3192-4395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, PRK09692 (Integrase; provisional)