myRT

myRT report for GCA_008180245.1_ASM818024v1

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Seq: VTBB01000062.1 Escherichia coli strain 221/19 NODE_62_length_9486_cov_90.0854_ID_123, whole genome shotgun sequence (9486 bp)
Overview 1 RT 1: 1380-4991 bp Neighborhood of RT #1 [1380, 5056] PRK09413 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1380-1745 bp Feature: domain Description: PRK09413 Location: 1383-1743 bp Feature: domain Description: PRK0941 3 Location: 1 383-1 743 bp Feature: gene Location: 2007-2366 bp Feature: domain Description: PHA02517 Location: 2010-2364 bp Feature: domain Description: PHA0251 7 Location: 201 0-2364 bp Feature: gene Location: 2483-4006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2756-3488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2756-3488 bp Feature: domain Description: GIIM Note: maturase Location: 3563-3761 bp Feature: domain Description: GIIM Note: maturase Location: 3563-3761 bp Feature: gene Location: 3960-4385 bp Feature: gene Location: 4598-5056 bp Feature: domain Description: PHA02517 Location: 4706-4991 bp Feature: domain Description: PHA0251 7 Location: 4706-4991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: VTBB01000074.1 Escherichia coli strain 221/19 NODE_74_length_2729_cov_106.241_ID_147, whole genome shotgun sequence (2729 bp)
Overview 1 RT 1: 1-2546 bp Neighborhood of RT #1 [1, 2560] YhhI YhhI RVT-GII GIIM YhhI Feature: gene Location: 1-507 bp Feature: domain Description: YhhI Location: 4-310 bp Feature: domain Description: YhhI Location: 4-310 bp Feature: domain Description: YhhI Location: 310-490 bp Feature: domain Description: YhhI Location: 310-490 bp Feature: gene Location: 535-675 bp Feature: gene Location: 1039-2289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1243-1900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 43-1900 bp Feature: domain Description: GIIM Note: maturase Location: 1981-2203 bp Feature: domain Description: GIIM Note: maturase Location: 1981-2 2 03 bp Feature: gene Location: 2300-2560 bp Feature: domain Description: YhhI Location: 2375-2546 bp Feature: domain Description: YhhI Location: 2 375-2 546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: VTBB01000008.1 Escherichia coli strain 221/19 NODE_8_length_204400_cov_63.7505_ID_15, whole genome shotgun sequence (204400 bp)
Overview 1 RT 1: 136631-142264 bp Neighborhood of RT #1 [136631, 142317] PRK13889 RVT-UG16 DUF4755 Feature: gene Location: 136631-136996 bp Feature: gene Location: 137644-139137 bp Feature: domain Description: PRK13889 Location: 137647-138247 bp Feature: domain Description: PRK13 889 Location: 13 7647-13 8247 bp Feature: gene Location: 139275-140759 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 139638-140046 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 13 963 8-140046 bp Feature: gene Location: 140888-141421 bp Feature: gene Location: 141829-142317 bp Feature: domain Description: DUF4755 Location: 141961-142264 bp Feature: domain Description: DUF4755 Location: 141961-142264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-UG16, DUF4755 (pfam15947)