myRT

myRT report for GCA_008269325.1_ASM826932v1

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Seq: VTLM01000002.1 Vibrio cholerae strain 3017 contig00002, whole genome shotgun sequence (496710 bp)
Overview 1 RT 1: 120531-125669 bp Neighborhood of RT #1 [120531, 125695] SLATT_5 RVT-UG17 PRK10621 LysR Feature: gene Location: 120531-121013 bp Feature: gene Location: 121597-122163 bp Ori: TYW52039.1 Feature: domain Description: SLATT_5 Location: 121606-122137 bp Feature: domain Description: SLATT_5 Location: 1 21 606-1 221 37 bp Feature: gene Location: 122160-123497 bp Ori: TYW52040.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 122385-122967 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 22385-1 22967 bp Feature: gene Location: 124120-124905 bp Ori: TYW52041.1 Feature: domain Description: PRK10621 Location: 124129-124900 bp Feature: domain Description: PRK1 0621 Location: 1 241 29-1 24900 bp Feature: gene Location: 124835-125695 bp Ori: TYW52042.1 Feature: domain Description: LysR Location: 124841-125669 bp Feature: domain Description: LysR Location: 1 24841 -1 25669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, PRK10621 (hypothetical protein; Provisional), LysR (COG0583)

Seq: VTLM01000009.1 Vibrio cholerae strain 3017 contig00009, whole genome shotgun sequence (142140 bp)
Overview 1 RT 1: 87005-90607 bp Neighborhood of RT #1 [87005, 90607] PHA01082 RVT-Retrons HTH_XRE Feature: gene Location: 87005-87316 bp Feature: gene Location: 87451-87807 bp Ori: TYW49671.1 Feature: domain Description: PHA01082 Location: 87454-87799 bp Feature: domain Description: PHA01082 Location: 87454-87799 bp Feature: gene Location: 87919-88869 bp Ori: TYW49672.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 88105-88639 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 88105-88639 bp Feature: gene Location: 88847-89158 bp Ori: TYW49673.1 Feature: domain Description: HTH_XRE Location: 88859-89018 bp Feature: domain Description: HTH_XRE Location: 88859-89018 bp Feature: gene Location: 90230-90607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA01082 (putative transcription regulator), RVT-Retrons, HTH_XRE (smart00530)