myRT

myRT report for GCA_008270335.1_ASM827033v1

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Seq: VTIG01000006.1 Listeria monocytogenes strain IN-RH-3-BL2 NODE_6_length_246597_cov_23.115167, whole genome shotgun sequence (246597 bp)
Overview 1 RT 1: 3515-9897 bp 2 RT 2: 44019-48225 bp Neighborhood of RT #1 [3515, 9911] MalY AAA_15 AAA_15 TOPRIM_OLD RVT-Retrons SalY LolD Neighborhood of RT #2 [44019, 48305] RVT-Retrons INT_ICEBs1_C_like Feature: gene Location: 3515-4693 bp Feature: domain Description: MalY Location: 3533-4688 bp Feature: domain Description: MalY Location: 3533-4688 bp Feature: gene Location: 4746-6683 bp Feature: domain Description: AAA_15 Location: 4749-5148 bp Feature: domain Description: AAA_1 5 Location: 4749-51 48 bp Feature: domain Description: AAA_15 Location: 5226-5646 bp Feature: domain Description: AAA_1 5 Location: 5226-5646 bp Feature: domain Description: TOPRIM_OLD Location: 5784-5985 bp Feature: domain Description: TOPRIM_OLD Location: 5784-5985 bp Feature: gene Location: 6886-7914 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6997-7573 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6997-7573 bp Feature: gene Location: 8128-9231 bp Feature: domain Description: SalY Location: 8452-9220 bp Feature: domain Description: SalY Location: 8452-9220 bp Feature: gene Location: 9231-9911 bp Feature: domain Description: LolD Location: 9249-9897 bp Feature: domain Description: LolD Location: 9249-9897 bp Feature: gene Location: 44019-44171 bp Feature: gene Location: 44588-45895 bp Feature: gene Location: 45944-46936 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46079-46622 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 46079-46622 bp Feature: gene Location: 46923-47204 bp Feature: gene Location: 48135-48305 bp Feature: domain Description: INT_ICEBs1_C_like Location: 48156-48225 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 481 56-48225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MalY (COG1168), AAA_15 (pfam13175), TOPRIM_OLD (cd01026), RVT-Retrons, SalY (COG0577), LolD (COG1136), INT_ICEBs1_C_like (cd01189)