myRT

myRT report for GCA_008274645.1_ASM827464v1

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Seq: VTDH01000025.1 Cyclobacterium marinum strain Atlantic-IS contig_25, whole genome shotgun sequence (59663 bp)
Overview 1 RT 1: 54267-56616 bp Neighborhood of RT #1 [54267, 56717] HigB RVT-GII COG1373 Feature: gene Location: 54267-54548 bp Feature: domain Description: HigB Location: 54270-54546 bp Feature: domain Description: HigB Location: 54270-54546 bp Feature: gene Location: 54696-54995 bp Feature: gene Location: 55021-55323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55075-55210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55075-5521 0 bp Feature: gene Location: 55385-55813 bp Feature: gene Location: 55893-56717 bp Feature: domain Description: COG1373 Location: 55911-56616 bp Feature: domain Description: COG1 373 Location: 5591 1 -5661 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HigB (COG4680), RVT-GII, COG1373 (Predicted ATPase, AAA+ superfamily )

Seq: VTDH01000042.1 Cyclobacterium marinum strain Atlantic-IS contig_42, whole genome shotgun sequence (5472 bp)
Overview 1 RT 1: 390-5398 bp Neighborhood of RT #1 [390, 5427] RVT-GII DUF1016_N YhcG_C RVT-GII Feature: gene Location: 390-821 bp Feature: gene Location: 966-1775 bp Feature: gene Location: 1884-2345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2139-2319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 139-2 319 bp Feature: gene Location: 2418-2594 bp Feature: gene Location: 2991-4031 bp Feature: domain Description: DUF1016_N Location: 3039-3474 bp Feature: domain Description: DUF1016_N Location: 3039-3474 bp Feature: domain Description: YhcG_C Location: 3549-4005 bp Feature: domain Description: YhcG_C Location: 3549-4005 bp Feature: gene Location: 4568-4696 bp Feature: gene Location: 4738-5427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4933-5398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4933-5398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF1016_N (pfam17761), YhcG_C

Seq: VTDH01000062.1 Cyclobacterium marinum strain Atlantic-IS contig_63, whole genome shotgun sequence (1501 bp)
Overview 1 RT 1: 78-1499 bp Neighborhood of RT #1 [78, 1498] RVT-GII GIIM Feature: gene Location: 78-218 bp Feature: gene Location: 293-1498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 572-1232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 572-123 2 bp Feature: domain Description: GIIM Note: maturase Location: 1316-1499 bp Feature: domain Description: GIIM Note: maturase Location: 13 16-1499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)