myRT

myRT report for GCA_008326365.1_ASM832636v1

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Seq: BKBY01000056.1 Escherichia coli PWD092 DNA, contig_56, whole genome shotgun sequence (2498 bp)
Overview 1 RT 1: 1-2371 bp Neighborhood of RT #1 [1, 2406] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-165 bp Feature: gene Location: 739-2406 bp Feature: domain Description: RVT_N Location: 787-1024 bp Feature: domain Description: RVT_N Location: 787-1 024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1075-1717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 075-1 71 7 bp Feature: domain Description: GIIM Note: maturase Location: 1768-2002 bp Feature: domain Description: GIIM Note: maturase Location: 1 768-2002 bp Feature: domain Description: HNHc Note: nucleases Location: 2212-2371 bp Feature: domain Description: HNHc Note: nucleases Location: 221 2-2371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: BKBY01000068.1 Escherichia coli PWD092 DNA, contig_68, whole genome shotgun sequence (5765 bp)
Overview 1 RT 1: 100-3237 bp Neighborhood of RT #1 [100, 3237] DUF1281 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 100-459 bp Feature: domain Description: DUF1281 Location: 109-424 bp Feature: domain Description: DUF12 81 Location: 109-42 4 bp Feature: gene Location: 523-834 bp Feature: gene Location: 1064-2764 bp Feature: domain Description: RVT_N Location: 1118-1361 bp Feature: domain Description: RVT_N Location: 1118-1361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1406-2042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1406-2 042 bp Feature: domain Description: GIIM Note: maturase Location: 2093-2327 bp Feature: domain Description: GIIM Note: maturase Location: 2 093-2 32 7 bp Feature: domain Description: HNHc Note: nucleases Location: 2558-2708 bp Feature: domain Description: HNHc Note: nucleases Location: 2 558-2 708 bp Feature: gene Location: 2801-2929 bp Feature: gene Location: 3037-3237 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: BKBY01000409.1 Escherichia coli PWD092 DNA, contig_409, whole genome shotgun sequence (1140 bp)
Overview 1 RT 1: 2-395 bp Neighborhood of RT #1 [2, 931] RVT-UG17 Feature: gene Location: 2-931 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8-395 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8-3 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17