myRT

myRT report for GCA_008326405.1_ASM832640v1

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Seq: BKBZ01000118.1 Escherichia coli PWD181 DNA, contig_118, whole genome shotgun sequence (41297 bp)
Overview 1 RT 1: 9559-13442 bp Neighborhood of RT #1 [9559, 13447] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9559-10017 bp Feature: domain Description: dut Location: 9565-10012 bp Feature: domain Description: dut Location: 9565-1 001 2 bp Feature: gene Location: 10124-10720 bp Feature: domain Description: slmA Location: 10130-10706 bp Feature: domain Description: slmA Location: 1 01 30-1 0706 bp Feature: gene Location: 10766-11725 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10901-11450 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 0901 -1 1 450 bp Feature: gene Location: 12023-12679 bp Feature: domain Description: pyrE Location: 12041-12674 bp Feature: domain Description: pyrE Location: 1 2041 -1 2674 bp Feature: gene Location: 12731-13447 bp Feature: domain Description: rph Location: 12734-13442 bp Feature: domain Description: rph Location: 1 2734-1 3442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), dut (TIGR00576)

Seq: BKBZ01000155.1 Escherichia coli PWD181 DNA, contig_155, whole genome shotgun sequence (2093 bp)
Overview 1 RT 1: 145-1845 bp Neighborhood of RT #1 [145, 2090] PHA02517 RVT-GII GIIM Feature: gene Location: 145-591 bp Feature: domain Description: PHA02517 Location: 148-589 bp Feature: domain Description: PHA02 517 Location: 148-589 bp Feature: gene Location: 708-2090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840-1572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 840-1572 bp Feature: domain Description: GIIM Note: maturase Location: 1647-1845 bp Feature: domain Description: GIIM Note: maturase Location: 1647-1845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: BKBZ01000170.1 Escherichia coli PWD181 DNA, contig_170, whole genome shotgun sequence (7937 bp)
Overview 1 RT 1: 3377-7298 bp Neighborhood of RT #1 [3377, 7405] prfC PRK10597 RVT-Retrons TIR_2 Feature: gene Location: 3377-4963 bp Feature: domain Description: prfC Location: 3395-4961 bp Feature: domain Description: prfC Location: 3 3 95-4961 bp Feature: gene Location: 5183-5443 bp Feature: domain Description: PRK10597 Location: 5186-5426 bp Feature: domain Description: PRK10597 Location: 5186-5426 bp Feature: gene Location: 5801-7405 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6092-6683 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6092-6683 bp Feature: domain Description: TIR_2 Location: 7010-7298 bp Feature: domain Description: TIR_2 Location: 7010-7298 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676)

Seq: BKBZ01000332.1 Escherichia coli PWD181 DNA, contig_332, whole genome shotgun sequence (1569 bp)
Overview 1 RT 1: 31-1388 bp Neighborhood of RT #1 [31, 1388] RVT_N RVT-GII Feature: gene Location: 31-954 bp Feature: RT Description: RVT_N Location: 79-322 bp Feature: RT Description: RVT_N Location: 79-322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367-937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367-937 bp Feature: gene Location: 981-1388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII