myRT

myRT report for GCA_008326645.1_ASM832664v1

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Seq: BJWQ01000003.1 Escherichia albertii U-30-1 DNA, entry3, whole genome shotgun sequence (265357 bp)
Overview 1 RT 1: 1-6444 bp Neighborhood of RT #1 [1, 6446] Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 1-1389 bp Feature: domain Description: Collar Location: 712-850 bp Feature: domain Description: Collar Location: 71 2-850 bp Feature: domain Description: Phage_fiber Location: 901-940 bp Feature: domain Description: Phage_fiber Location: 901 -940 bp Feature: domain Description: Phage_fiber Location: 997-1036 bp Feature: domain Description: Phage_fiber Location: 997-1 036 bp Feature: domain Description: Phage_fiber Location: 1192-1231 bp Feature: domain Description: Phage_fiber Location: 1 1 92-1 231 bp Feature: domain Description: Phage_fiber Location: 1237-1267 bp Feature: domain Description: Phage_fiber Location: 1 237-1 267 bp Feature: gene Location: 1389-1973 bp Feature: domain Description: Caudo_TAP Location: 1605-1962 bp Feature: domain Description: Caudo_TAP Location: 1 605-1 962 bp Feature: gene Location: 2418-4022 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2709-3300 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2709-3300 bp Feature: domain Description: TIR_2 Location: 3627-3960 bp Feature: domain Description: TIR_2 Location: 3627-3960 bp Feature: gene Location: 4380-4640 bp Feature: domain Description: PRK10597 Location: 4383-4623 bp Feature: domain Description: PRK1 0597 Location: 4383-4623 bp Feature: gene Location: 4860-6446 bp Feature: domain Description: prfC Location: 4878-6444 bp Feature: domain Description: prfC Location: 4878-6444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Collar (pfam07484), Phage_fiber (pfam03335), Caudo_TAP (pfam02413), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: BJWQ01000015.1 Escherichia albertii U-30-1 DNA, entry15, whole genome shotgun sequence (100167 bp)
Overview 1 RT 1: 18588-23385 bp 2 RT 2: 88639-95891 bp Neighborhood of RT #1 [18588, 23387] COG3547 RVT_N RVT-GII GIIM HNHc PRK13699 Neighborhood of RT #2 [88639, 95893] RVT-GII GIIM ESPR Peptidase_S6 Peptidase_S6 autotrans_barl Feature: gene Location: 18588-19604 bp Feature: domain Description: COG3547 Location: 18603-19569 bp Feature: domain Description: COG3547 Location: 18603-19569 bp Feature: gene Location: 19879-20064 bp Feature: gene Location: 20454-22154 bp Feature: domain Description: RVT_N Location: 20508-20751 bp Feature: domain Description: RVT_N Location: 2 0508-2 0751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20796-21432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0796-2 1432 bp Feature: domain Description: GIIM Note: maturase Location: 21483-21717 bp Feature: domain Description: GIIM Note: maturase Location: 2 1483-2 1717 bp Feature: domain Description: HNHc Note: nucleases Location: 21948-22098 bp Feature: domain Description: HNHc Note: nucleases Location: 2 1948-2 2 098 bp Feature: gene Location: 22191-22319 bp Feature: gene Location: 22641-23387 bp Feature: domain Description: PRK13699 Location: 22776-23385 bp Feature: domain Description: PRK13699 Location: 2 2 776-2 3385 bp Feature: gene Location: 88639-88920 bp Feature: gene Location: 88924-89184 bp Feature: gene Location: 90201-91286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90402-91056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90402 -91056 bp Feature: domain Description: GIIM Note: maturase Location: 91134-91272 bp Feature: domain Description: GIIM Note: maturase Location: 91134-912 72 bp Feature: gene Location: 91293-91427 bp Feature: gene Location: 91910-95893 bp Feature: domain Description: ESPR Location: 91955-92021 bp Feature: domain Description: ESPR Location: 91955-92 02 1 bp Feature: domain Description: Peptidase_S6 Location: 92117-93467 bp Feature: domain Description: Peptidase_S6 Location: 92 117-93467 bp Feature: domain Description: Peptidase_S6 Location: 93521-93659 bp Feature: domain Description: Peptidase_S6 Location: 9352 1-93659 bp Feature: domain Description: autotrans_barl Location: 94667-95891 bp Feature: domain Description: autotrans_barl Location: 94667-95891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: BJWQ01000082.1 Escherichia albertii U-30-1 DNA, entry82, whole genome shotgun sequence (515276 bp)
Overview 1 RT 1: 100402-106446 bp Neighborhood of RT #1 [100402, 106446] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Feature: gene Location: 100402-101331 bp Feature: domain Description: AbiEii Location: 100441-101185 bp Feature: domain Description: AbiEii Location: 100441-101185 bp Feature: gene Location: 101318-102100 bp Feature: domain Description: AbiEi_3_N Location: 101324-101591 bp Feature: domain Description: AbiEi_3 _N Location: 1013 24-101591 bp Feature: domain Description: AbiEi_3 Location: 101603-102059 bp Feature: domain Description: AbiEi_3 Location: 101603 -102059 bp Feature: gene Location: 102417-105629 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 102945-103443 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 102945-103 443 bp Feature: domain Description: nitrilase Location: 104940-105540 bp Feature: domain Description: nitrilase Location: 104940-105540 bp Feature: gene Location: 105688-105882 bp Feature: gene Location: 105976-106446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424)