myRT

myRT report for GCA_008326805.1_ASM832680v1

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Seq: BKCD01000004.1 Escherichia coli TH27B DNA, contig004, whole genome shotgun sequence (160450 bp)
Overview 1 RT 1: 121997-128033 bp Neighborhood of RT #1 [121997, 128050] PRK09692 RVT-UG5 nitrilase Psu Feature: gene Location: 121997-122221 bp Feature: gene Location: 122366-123622 bp Feature: domain Description: PRK09692 Location: 122375-123578 bp Feature: domain Description: PRK09692 Location: 1 22375-1 23578 bp Feature: gene Location: 123714-126590 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 124188-124716 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 241 88-1 2471 6 bp Feature: domain Description: nitrilase Location: 125928-126510 bp Feature: domain Description: nitrilase Location: 1 25928-1 2651 0 bp Feature: gene Location: 126587-127276 bp Feature: gene Location: 127478-128050 bp Feature: domain Description: Psu Location: 127496-128033 bp Feature: domain Description: Psu Location: 1 27496-1 28033 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG5, nitrilase (cl11424), Psu (pfam07455)

Seq: BKCD01000089.1 Escherichia coli TH27B DNA, contig089, whole genome shotgun sequence (7682 bp)
Overview 1 RT 1: 4692-7153 bp Neighborhood of RT #1 [4692, 7251] RVT-GII RVT-GII GIIM RAYT Feature: gene Location: 4692-4829 bp Feature: gene Location: 4919-5188 bp Feature: gene Location: 5213-5857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5501-5852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5501-5852 bp Feature: gene Location: 5864-6559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5867-6119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5867-6119 bp Feature: domain Description: GIIM Note: maturase Location: 6167-6398 bp Feature: domain Description: GIIM Note: maturase Location: 6167-6398 bp Feature: gene Location: 6634-7251 bp Feature: domain Description: RAYT Location: 6790-7153 bp Feature: domain Description: RAYT Location: 6790-7153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RAYT (COG1943)

Seq: BKCD01000091.1 Escherichia coli TH27B DNA, contig091, whole genome shotgun sequence (7443 bp)
Overview 1 RT 1: 1116-5423 bp Neighborhood of RT #1 [1116, 5423] DDE_Tnp_1_4 ampC RVT-Retrons Feature: gene Location: 1116-2378 bp Feature: domain Description: DDE_Tnp_1_4 Location: 1128-2370 bp Feature: domain Description: DDE_Tnp_1_4 Location: 1128-23 70 bp Feature: gene Location: 2618-3847 bp Feature: domain Description: ampC Location: 2705-3845 bp Feature: domain Description: ampC Location: 2705-3 845 bp Feature: gene Location: 3913-4974 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4057-4612 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4057-4612 bp Feature: gene Location: 4996-5178 bp Feature: gene Location: 5268-5423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), ampC (PRK11289), RVT-Retrons

Seq: BKCD01000120.1 Escherichia coli TH27B DNA, contig120, whole genome shotgun sequence (2276 bp)
Overview 1 RT 1: 2-1939 bp Neighborhood of RT #1 [2, 2184] RVT-GII GIIM Feature: gene Location: 2-367 bp Feature: gene Location: 661-2184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934 -1666 bp Feature: domain Description: GIIM Note: maturase Location: 1741-1939 bp Feature: domain Description: GIIM Note: maturase Location: 174 1-1939 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)