myRT

myRT report for GCA_008363395.1_ASM836339v1

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Seq: RHKZ01000010.1 Candidatus Brocadia sp. AMX2 N2_1.scaffold_226, whole genome shotgun sequence (53710 bp)
Overview 1 RT 1: 48808-51141 bp Neighborhood of RT #1 [48808, 51269] PemK_toxin RVT-GII GIIM arc_metj Feature: gene Location: 48808-49053 bp Feature: domain Description: PemK_toxin Location: 48847-49036 bp Feature: domain Description: PemK_toxin Location: 48847-49036 bp Feature: gene Location: 49442-49579 bp Feature: gene Location: 49825-50442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49840-50065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49840-50065 bp Feature: domain Description: GIIM Note: maturase Location: 50137-50356 bp Feature: domain Description: GIIM Note: maturase Location: 501 37-50356 bp Feature: gene Location: 50662-50949 bp Feature: gene Location: 50994-51269 bp Feature: domain Description: arc_metj Location: 51024-51141 bp Feature: domain Description: arc_metj Location: 51 024-51 1 41 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PemK_toxin (pfam02452), RVT-GII, GIIM (pfam08388), arc_metj (LOAD_arc_metj)

Seq: RHKZ01000029.1 Candidatus Brocadia sp. AMX2 N2_1.scaffold_470, whole genome shotgun sequence (27991 bp)
Overview 1 RT 1: 24956-27821 bp Neighborhood of RT #1 [24956, 27829] RVT-CRISPR-like GxxExxY Feature: gene Location: 24956-25732 bp Feature: gene Location: 25744-26523 bp Feature: gene Location: 26523-27467 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 26712-27309 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2 6712 -2 7309 bp Feature: gene Location: 27467-27829 bp Feature: domain Description: GxxExxY Location: 27479-27821 bp Feature: domain Description: GxxExxY Location: 2 7479-2 782 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, GxxExxY (TIGR04256)

Seq: RHKZ01000035.1 Candidatus Brocadia sp. AMX2 N2_1.scaffold_497, whole genome shotgun sequence (45314 bp)
Overview 1 RT 1: 19329-23924 bp Neighborhood of RT #1 [19329, 23924] CcmA CcmA RVT-CRISPR Cas1_I-II-III CRISPR_Cas6 Feature: gene Location: 19329-19808 bp Feature: domain Description: CcmA Location: 19422-19746 bp Feature: domain Description: CcmA Location: 19422-19746 bp Feature: gene Location: 19845-20399 bp Feature: domain Description: CcmA Location: 20133-20385 bp Feature: domain Description: CcmA Location: 2013 3 -203 85 bp Feature: gene Location: 20471-22183 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 20477-21137 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 20477-2113 7 bp Feature: domain Description: Cas1_I-II-III Location: 21218-22136 bp Feature: domain Description: Cas1_I-II-III Location: 21218-2213 6 bp Feature: gene Location: 22207-23229 bp Feature: domain Description: CRISPR_Cas6 Location: 22837-23176 bp Feature: domain Description: CRISPR_Cas6 Location: 2283 7-23 176 bp Feature: gene Location: 23739-23924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), RVT-CRISPR, Cas1_I-II-III (cl00656), CRISPR_Cas6 (pfam10040)