myRT

myRT report for GCA_008363445.1_ASM836344v1

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Seq: RHLA01000077.1 Candidatus Jettenia sp. AMX1 N2_1.scaffold_1385, whole genome shotgun sequence (10833 bp)
Overview 1 RT 1: 6553-10754 bp Neighborhood of RT #1 [6553, 10754] BNR BNR BNR two_anch vWFA RVT-GII Feature: gene Location: 6553-7455 bp Feature: domain Description: BNR Location: 6979-7009 bp Feature: domain Description: BNR Location: 6979-7009 bp Feature: domain Description: BNR Location: 7099-7126 bp Feature: domain Description: BNR Location: 7099-71 26 bp Feature: domain Description: BNR Location: 7378-7408 bp Feature: domain Description: BNR Location: 7378-7408 bp Feature: gene Location: 7646-9778 bp Feature: domain Description: two_anch Location: 7655-7886 bp Feature: domain Description: two_anch Location: 7655-7886 bp Feature: domain Description: vWFA Location: 7934-8261 bp Feature: domain Description: vWFA Location: 7934-8261 bp Feature: gene Location: 10055-10471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10061-10412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0061 -1 041 2 bp Feature: gene Location: 10398-10754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BNR (pfam02012), two_anch (TIGR02226), vWFA (cl00057), RVT-GII

Seq: RHLA01000010.1 Candidatus Jettenia sp. AMX1 N2_1.scaffold_198, whole genome shotgun sequence (197610 bp)
Overview 1 RT 1: 100376-103168 bp Neighborhood of RT #1 [100376, 103168] COG4190 RVT-GII INT_Rci_Hp1_C Feature: gene Location: 100376-100750 bp Feature: domain Description: COG4190 Location: 100388-100745 bp Feature: domain Description: COG4190 Location: 100388-100745 bp Feature: gene Location: 101137-101343 bp Feature: gene Location: 101449-102222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101842-102190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101842 -102 190 bp Feature: gene Location: 102294-102989 bp Feature: domain Description: INT_Rci_Hp1_C Location: 102366-102891 bp Feature: domain Description: INT_Rci_Hp1_C Location: 102 366-102 891 bp Feature: gene Location: 102995-103168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4190 (Predicted transcriptional regulator ), RVT-GII, INT_Rci_Hp1_C (cd00796)

Seq: RHLA01000020.1 Candidatus Jettenia sp. AMX1 N2_1.scaffold_299, whole genome shotgun sequence (94347 bp)
Overview 1 RT 1: 43215-47117 bp Neighborhood of RT #1 [43215, 47143] DUF5615 RVT-CRISPR GIIM Cas1_I-II-III PIN_MT3492-like Feature: gene Location: 43215-43382 bp Feature: domain Description: DUF5615 Location: 43227-43380 bp Feature: domain Description: DUF5615 Location: 43 227-43 3 80 bp Feature: gene Location: 43443-43592 bp Feature: gene Location: 43825-46140 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 44035-44659 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4403 5-44659 bp Feature: domain Description: GIIM Note: maturase Location: 44710-44911 bp Feature: domain Description: GIIM Note: maturase Location: 44710-44911 bp Feature: domain Description: Cas1_I-II-III Location: 45136-46102 bp Feature: domain Description: Cas1_I-II-III Location: 4513 6-46102 bp Feature: gene Location: 46255-46503 bp Feature: gene Location: 46706-47143 bp Feature: domain Description: PIN_MT3492-like Location: 46715-47117 bp Feature: domain Description: PIN_MT3 492-like Location: 46715-47117 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5615 (pfam18480), RVT-CRISPR, GIIM (pfam08388), Cas1_I-II-III (cl00656), PIN_MT3492-like (cd09874)