myRT

myRT report for GCA_008364455.1_ASM836445v1

Download annotations/find similar RTs

Seq: VTUG01000070.1 Escherichia coli strain Ec1117 NODE_27_length_55945_cov_32.1677, whole genome shotgun sequence (55945 bp)
Overview 1 RT 1: 40793-46373 bp Neighborhood of RT #1 [40793, 46378] RVT-Retrons Q P Feature: gene Location: 40793-41128 bp Feature: gene Location: 41400-41543 bp Feature: gene Location: 41774-43531 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41918-42539 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 91 8-42539 bp Feature: gene Location: 43581-44612 bp Feature: domain Description: Q Location: 43584-44607 bp Feature: domain Description: Q Location: 43584-44607 bp Feature: gene Location: 44612-46378 bp Feature: domain Description: P Location: 44639-46373 bp Feature: domain Description: P Location: 44639-46373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Q (PHA02536), P (PHA02535)

Seq: VTUG01000080.1 Escherichia coli strain Ec1117 NODE_37_length_34411_cov_28.9912, whole genome shotgun sequence (34411 bp)
Overview 1 RT 1: 9220-12859 bp Neighborhood of RT #1 [9220, 13026] InsE PHA02517 RVT-GII GIIM COG2085 Feature: gene Location: 9220-9522 bp Feature: domain Description: InsE Location: 9259-9508 bp Feature: domain Description: InsE Location: 92 59-9508 bp Feature: gene Location: 9578-10003 bp Feature: domain Description: PHA02517 Location: 9602-9938 bp Feature: domain Description: PHA02 517 Location: 9602 -9938 bp Feature: gene Location: 10595-12118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10868-11600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10868-11600 bp Feature: domain Description: GIIM Note: maturase Location: 11675-11873 bp Feature: domain Description: GIIM Note: maturase Location: 11675-11873 bp Feature: gene Location: 12313-12447 bp Feature: gene Location: 12613-13026 bp Feature: domain Description: COG2085 Location: 12712-12859 bp Feature: domain Description: COG2 085 Location: 12 712 -12 859 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG2085 (Predicted dinucleotide-binding enzyme ), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)