myRT

myRT report for GCA_008365185.1_ASM836518v1

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Seq: VTWB01000019.1 Escherichia coli strain RF9 NODE_19_length_20863_cov_39.417, whole genome shotgun sequence (20863 bp)
Overview 1 RT 1: 238-2770 bp Neighborhood of RT #1 [238, 2770] RVT-Retrons HTH_XRE Feature: gene Location: 238-1038 bp Feature: gene Location: 1204-2154 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1384-1921 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 384-1 921 bp Feature: gene Location: 2138-2452 bp Feature: domain Description: HTH_XRE Location: 2162-2324 bp Feature: domain Description: HTH_XRE Location: 21 62-2324 bp Feature: gene Location: 2477-2770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530)

Seq: VTWB01000224.1 Escherichia coli strain RF9 NODE_224_length_5546_cov_62.346, whole genome shotgun sequence (5546 bp)
Overview 1 RT 1: 1-3445 bp Neighborhood of RT #1 [1, 3462] RVT-GII GIIM PHA02517 LysM IAT_beta PRK15318 Invasin_D3 Feature: gene Location: 1-1026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-508 bp Feature: domain Description: GIIM Note: maturase Location: 583-781 bp Feature: domain Description: GIIM Note: maturase Location: 583-781 bp Feature: gene Location: 1149-1583 bp Feature: domain Description: PHA02517 Location: 1152-1575 bp Feature: domain Description: PHA02 517 Location: 1152 -1575 bp Feature: gene Location: 1585-3462 bp Feature: domain Description: LysM Location: 1825-1963 bp Feature: domain Description: LysM Location: 182 5-1963 bp Feature: domain Description: IAT_beta Location: 2044-2869 bp Feature: domain Description: IAT_beta Location: 2 044-2 869 bp Feature: domain Description: PRK15318 Location: 3070-3193 bp Feature: domain Description: PRK15318 Location: 3070-3193 bp Feature: domain Description: Invasin_D3 Location: 3208-3445 bp Feature: domain Description: Invasin_D3 Location: 32 08-3445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), LysM (smart00257), IAT_beta (pfam11924), PRK15318 (intimin-like protein SinH; Provisional), Invasin_D3 (pfam09134)

Seq: VTWB01000276.1 Escherichia coli strain RF9 NODE_276_length_4622_cov_16.9869, whole genome shotgun sequence (4622 bp)
Overview 1 RT 1: 834-4614 bp Neighborhood of RT #1 [834, 4619] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 834-1292 bp Feature: domain Description: dut Location: 840-1287 bp Feature: domain Description: dut Location: 840-1287 bp Feature: gene Location: 1399-1995 bp Feature: domain Description: slmA Location: 1405-1981 bp Feature: domain Description: slmA Location: 1405-1981 bp Feature: gene Location: 2041-3000 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2176-2725 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2176-2725 bp Feature: gene Location: 3298-3954 bp Feature: domain Description: pyrE Location: 3316-3949 bp Feature: domain Description: pyrE Location: 3 3 16-3 949 bp Feature: gene Location: 4005-4619 bp Feature: domain Description: rph Location: 4128-4614 bp Feature: domain Description: rph Location: 4128-4614 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: VTWB01000077.1 Escherichia coli strain RF9 NODE_77_length_11374_cov_63.1271, whole genome shotgun sequence (11374 bp)
Overview 1 RT 1: 6898-11354 bp Neighborhood of RT #1 [6898, 11371] PRK09692 RVT-UG7 Psu Feature: gene Location: 6898-7026 bp Feature: gene Location: 7326-8510 bp Feature: domain Description: PRK09692 Location: 7332-8487 bp Feature: domain Description: PRK09692 Location: 7332-84 87 bp Feature: gene Location: 8503-10131 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 8911-9340 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 8911-934 0 bp Feature: gene Location: 10128-10868 bp Feature: gene Location: 11171-11371 bp Feature: domain Description: Psu Location: 11177-11354 bp Feature: domain Description: Psu Location: 11177-11354 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: VTWB01000796.1 Escherichia coli strain RF9 NODE_796_length_1281_cov_39.6976, whole genome shotgun sequence (1281 bp)
Overview 1 RT 1: 1-1272 bp Neighborhood of RT #1 [1, 1280] RVT-GII Feature: gene Location: 1-363 bp Feature: gene Location: 657-1280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII