myRT

myRT report for GCA_008369285.1_ASM836928v1

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Seq: VOBH01000026.1 Pseudomonas sp. ANT_H14 ctg00026_79573, whole genome shotgun sequence (79573 bp)
Overview 1 RT 1: 66913-74012 bp Neighborhood of RT #1 [66913, 74017] clpP tig RVT_N RVT-GII GIIM HNH PRK10792 Feature: gene Location: 66913-67554 bp Feature: domain Description: clpP Location: 66967-67543 bp Feature: domain Description: clpP Location: 66967-67543 bp Feature: gene Location: 67647-68915 bp Feature: domain Description: tig Location: 67653-68886 bp Feature: domain Description: tig Location: 67653-68886 bp Feature: gene Location: 69087-70790 bp Feature: RT Description: RVT_N Location: 69144-69387 bp Feature: RT Description: RVT_N Location: 691 44-69387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69432-70068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69432-70068 bp Feature: domain Description: GIIM Note: maturase Location: 70119-70353 bp Feature: domain Description: GIIM Note: maturase Location: 701 1 9-70353 bp Feature: domain Description: HNH Note: nucleases Location: 70605-70743 bp Feature: domain Description: HNH Note: nucleases Location: 70605-70743 bp Feature: gene Location: 72250-72531 bp Feature: gene Location: 73163-74017 bp Feature: domain Description: PRK10792 Location: 73166-74012 bp Feature: domain Description: PRK1 0792 Location: 731 66-7401 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpP, tig (TIGR00115), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PRK10792 (bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD)

Seq: VOBH01000027.1 Pseudomonas sp. ANT_H14 ctg00027_76445, whole genome shotgun sequence (76445 bp)
Overview 1 RT 1: 283-5700 bp Neighborhood of RT #1 [283, 5705] RVT-GII GIIM Resolvase Recombinase Zn_ribbon_recom RVT-GII OprD Feature: gene Location: 283-861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 286-445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 86-445 bp Feature: domain Description: GIIM Note: maturase Location: 499-703 bp Feature: domain Description: GIIM Note: maturase Location: 499-703 bp Feature: gene Location: 881-2602 bp Feature: domain Description: Resolvase Location: 902-1340 bp Feature: domain Description: Resolvase Location: 902 -1340 bp Feature: domain Description: Recombinase Location: 1436-1793 bp Feature: domain Description: Recombinase Location: 1436-1793 bp Feature: domain Description: Zn_ribbon_recom Location: 1832-2036 bp Feature: domain Description: Zn_ribbon_recom Location: 1832 -2 036 bp Feature: gene Location: 2897-3670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3254-3644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 54-3644 bp Feature: gene Location: 3820-3990 bp Feature: gene Location: 4380-5705 bp Feature: domain Description: OprD Location: 4473-5700 bp Feature: domain Description: OprD Location: 4473-5700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), OprD (pfam03573), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)

Seq: VOBH01000047.1 Pseudomonas sp. ANT_H14 ctg00047_38129, whole genome shotgun sequence (38129 bp)
Overview 1 RT 1: 30727-34832 bp Neighborhood of RT #1 [30727, 34969] SBP_bac_11 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 Feature: gene Location: 30727-30912 bp Feature: domain Description: SBP_bac_11 Location: 30742-30886 bp Feature: domain Description: SBP_bac_11 Location: 3 0742-3 0886 bp Feature: gene Location: 31028-31162 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 31034-31145 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3 103 4-3 1145 bp Feature: gene Location: 31354-33015 bp Feature: RT Description: RVT_N Location: 31399-31642 bp Feature: RT Description: RVT_N Location: 3 13 99-3 1642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31687-32323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1687-3 23 23 bp Feature: domain Description: GIIM Note: maturase Location: 32383-32608 bp Feature: domain Description: GIIM Note: maturase Location: 3 23 83 -3 2608 bp Feature: gene Location: 33100-33366 bp Feature: gene Location: 33455-34969 bp Feature: domain Description: LZ_Tnp_IS66 Location: 33650-33863 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3 3 650-3 3 863 bp Feature: domain Description: zf-IS66 Location: 33890-34016 bp Feature: domain Description: zf-IS66 Location: 3 3 890-3 4016 bp Feature: domain Description: DDE_Tnp_IS66 Location: 34058-34832 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3 4058-3 483 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SBP_bac_11 (pfam13531), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)

Seq: VOBH01000056.1 Pseudomonas sp. ANT_H14 ctg00056_20109, whole genome shotgun sequence (20109 bp)
Overview 1 RT 1: 11790-17204 bp Neighborhood of RT #1 [11790, 17287] PPK2_P_aer IS5 RVT-GII GIIM IS5 ABC_phnC Feature: gene Location: 11790-12659 bp Feature: domain Description: PPK2_P_aer Location: 11907-12588 bp Feature: domain Description: PPK2_P_aer Location: 11907-12588 bp Feature: gene Location: 13168-13626 bp Feature: domain Description: IS5 Location: 13171-13600 bp Feature: domain Description: IS5 Location: 13171-13600 bp Feature: gene Location: 13698-14966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13911-14568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13911-14 568 bp Feature: domain Description: GIIM Note: maturase Location: 14646-14868 bp Feature: domain Description: GIIM Note: maturase Location: 14 64 6-14 868 bp Feature: gene Location: 15459-15998 bp Feature: domain Description: IS5 Location: 15648-15975 bp Feature: domain Description: IS5 Location: 1564 8-15975 bp Feature: gene Location: 16460-17287 bp Feature: domain Description: ABC_phnC Location: 16490-17204 bp Feature: domain Description: ABC_phnC Location: 164 90-17204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PPK2_P_aer (TIGR03707), IS5 (COG3039), RVT-GII, GIIM (pfam08388), ABC_phnC (TIGR02315)

Seq: VOBH01000067.1 Pseudomonas sp. ANT_H14 ctg00067_14352, whole genome shotgun sequence (14352 bp)
Overview 1 RT 1: 4842-9484 bp Neighborhood of RT #1 [4842, 9510] MoxR NorD RVT-GII DDE_Tnp_Tn3 RpoE Feature: gene Location: 4842-5657 bp Feature: domain Description: MoxR Location: 4944-5547 bp Feature: domain Description: MoxR Location: 4944-5 5 47 bp Feature: gene Location: 5658-7679 bp Feature: domain Description: NorD Location: 6498-7671 bp Feature: domain Description: NorD Location: 6498-7671 bp Feature: gene Location: 7887-8057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7890-8034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7890-8034 bp Feature: gene Location: 8447-8707 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 8549-8630 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 85 49-8630 bp Feature: gene Location: 8950-9510 bp Feature: domain Description: RpoE Location: 8974-9484 bp Feature: domain Description: RpoE Location: 8974-9484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MoxR (COG0714), NorD (COG4548), RVT-GII, DDE_Tnp_Tn3 (pfam01526), RpoE (COG3343)