myRT

myRT report for GCA_008369295.1_ASM836929v1

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Seq: VOBG01000023.1 Pseudomonas sp. ANT_H4 ctg00023_79420, whole genome shotgun sequence (79420 bp)
Overview 1 RT 1: 7043-12650 bp Neighborhood of RT #1 [7043, 12661] RVT_N RVT-GII GIIM HNH tig clpP Feature: gene Location: 7043-7324 bp Feature: gene Location: 8291-8419 bp Feature: gene Location: 8784-10487 bp Feature: domain Description: RVT_N Location: 8841-9084 bp Feature: domain Description: RVT_N Location: 8841 -9084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9129-9765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 29-9765 bp Feature: domain Description: GIIM Note: maturase Location: 9816-10050 bp Feature: domain Description: GIIM Note: maturase Location: 981 6-1 0050 bp Feature: domain Description: HNH Note: nucleases Location: 10302-10440 bp Feature: domain Description: HNH Note: nucleases Location: 1 0302-1 0440 bp Feature: gene Location: 10617-11927 bp Feature: domain Description: tig Location: 10620-11898 bp Feature: domain Description: tig Location: 1 0620-1 1 898 bp Feature: gene Location: 12020-12661 bp Feature: domain Description: clpP Location: 12074-12650 bp Feature: domain Description: clpP Location: 1 2074-1 2650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), tig (TIGR00115), clpP

Seq: VOBG01000032.1 Pseudomonas sp. ANT_H4 ctg00032_57627, whole genome shotgun sequence (57627 bp)
Overview 1 RT 1: 48117-52759 bp Neighborhood of RT #1 [48117, 52785] MoxR NorD RVT-GII DDE_Tnp_Tn3 RpoE Feature: gene Location: 48117-48932 bp Feature: domain Description: MoxR Location: 48219-48822 bp Feature: domain Description: MoxR Location: 482 19-4882 2 bp Feature: gene Location: 48933-50954 bp Feature: domain Description: NorD Location: 49773-50946 bp Feature: domain Description: NorD Location: 49773-50946 bp Feature: gene Location: 51162-51332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51165-51309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51165-51309 bp Feature: gene Location: 51722-51982 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 51824-51905 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 5182 4-51905 bp Feature: gene Location: 52225-52785 bp Feature: domain Description: RpoE Location: 52249-52759 bp Feature: domain Description: RpoE Location: 52 2 49-52 759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MoxR (COG0714), NorD (COG4548), RVT-GII, DDE_Tnp_Tn3 (pfam01526), RpoE (COG3343)

Seq: VOBG01000041.1 Pseudomonas sp. ANT_H4 ctg00041_38129, whole genome shotgun sequence (38129 bp)
Overview 1 RT 1: 3188-7377 bp Neighborhood of RT #1 [3188, 7403] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM SBP_bac_11 Feature: gene Location: 3188-4675 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3356-3569 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3 3 56-3 569 bp Feature: domain Description: zf-IS66 Location: 3596-3722 bp Feature: domain Description: zf-IS66 Location: 3 596-3 722 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3764-4538 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3 764-453 8 bp Feature: gene Location: 4764-5075 bp Feature: gene Location: 5115-6776 bp Feature: domain Description: RVT_N Location: 5160-5403 bp Feature: domain Description: RVT_N Location: 5160-5403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5448-6084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5448-6084 bp Feature: domain Description: GIIM Note: maturase Location: 6144-6369 bp Feature: domain Description: GIIM Note: maturase Location: 6144-63 69 bp Feature: gene Location: 6807-6971 bp Feature: gene Location: 7026-7403 bp Feature: domain Description: SBP_bac_11 Location: 7149-7377 bp Feature: domain Description: SBP_bac_11 Location: 7149-73 77 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), SBP_bac_11 (pfam13531)

Seq: VOBG01000042.1 Pseudomonas sp. ANT_H4 ctg00042_35440, whole genome shotgun sequence (35440 bp)
Overview 1 RT 1: 22253-25536 bp Neighborhood of RT #1 [22253, 25559] IS5 RVT-GII GIIM IS5 Feature: gene Location: 22253-22498 bp Feature: gene Location: 22729-23349 bp Feature: domain Description: IS5 Location: 22879-23323 bp Feature: domain Description: IS5 Location: 22879-23323 bp Feature: gene Location: 23259-24527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23472-24129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234 72-24 129 bp Feature: domain Description: GIIM Note: maturase Location: 24207-24429 bp Feature: domain Description: GIIM Note: maturase Location: 24 207-24 4 29 bp Feature: gene Location: 24204-24773 bp Feature: gene Location: 25020-25559 bp Feature: domain Description: IS5 Location: 25209-25536 bp Feature: domain Description: IS5 Location: 25209-25536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388)

Seq: VOBG01000047.1 Pseudomonas sp. ANT_H4 ctg00047_15426, whole genome shotgun sequence (15426 bp)
Overview 1 RT 1: 9722-14986 bp Neighborhood of RT #1 [9722, 15144] OprD RVT-GII Resolvase Recombinase Zn_ribbon_recom RVT-GII GIIM Feature: gene Location: 9722-11047 bp Feature: domain Description: OprD Location: 9815-11042 bp Feature: domain Description: OprD Location: 9815 -11042 bp Feature: gene Location: 11434-11730 bp Feature: gene Location: 11757-12530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12114-12504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12114-125 04 bp Feature: gene Location: 12825-14546 bp Feature: domain Description: Resolvase Location: 12846-13284 bp Feature: domain Description: Resolvase Location: 12846-13284 bp Feature: domain Description: Recombinase Location: 13380-13737 bp Feature: domain Description: Recombinase Location: 13380-13737 bp Feature: domain Description: Zn_ribbon_recom Location: 13776-13980 bp Feature: domain Description: Zn_ribbon_recom Location: 13776-13980 bp Feature: gene Location: 14566-15144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14569-14728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145 69-14728 bp Feature: domain Description: GIIM Note: maturase Location: 14782-14986 bp Feature: domain Description: GIIM Note: maturase Location: 14782-14986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OprD (pfam03573), RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), GIIM (pfam08388)