myRT

myRT report for GCA_008369545.1_ASM836954v1

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Seq: VTZO01000013.1 Pseudocitrobacter sp. 73 SQ51_contig_13, whole genome shotgun sequence (308330 bp)
Overview 1 RT 1: 260382-264596 bp Neighborhood of RT #1 [260382, 264607] Phage_ASH RVT-UG7 PRK10473 Feature: gene Location: 260382-260579 bp Feature: domain Description: Phage_ASH Location: 260418-260553 bp Feature: domain Description: Phage_ASH Location: 26041 8-260553 bp Feature: gene Location: 260758-261228 bp Feature: gene Location: 261290-262828 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 261662-262082 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 261 662-262082 bp Feature: gene Location: 263189-263323 bp Feature: gene Location: 263423-264607 bp Feature: domain Description: PRK10473 Location: 263426-264596 bp Feature: domain Description: PRK1 0473 Location: 263426-264596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_ASH (pfam10554), RVT-UG7, PRK10473 (MdtL family multidrug efflux MFS transporter)

Seq: VTZO01000020.1 Pseudocitrobacter sp. 73 SQ51_contig_20, whole genome shotgun sequence (340674 bp)
Overview 1 RT 1: 339320-340317 bp Neighborhood of RT #1 [339320, 340556] XRE RVT-Retrons Feature: gene Location: 339320-339616 bp Feature: domain Description: XRE Location: 339329-339512 bp Feature: domain Description: XRE Location: 33932 9-339512 bp Feature: gene Location: 339751-339942 bp Feature: gene Location: 339798-340556 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 339804-340317 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 339804-340317 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XRE (COG1476), RVT-Retrons

Seq: VTZO01000023.1 Pseudocitrobacter sp. 73 SQ51_contig_23, whole genome shotgun sequence (2399 bp)
Overview 1 RT 1: 1-2062 bp Neighborhood of RT #1 [1, 2307] PHA02517 RVT-GII GIIM Feature: gene Location: 1-192 bp Feature: domain Description: PHA02517 Location: 22-127 bp Feature: domain Description: PHA02517 Location: 22-127 bp Feature: gene Location: 784-2307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2062 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: VTZO01000083.1 Pseudocitrobacter sp. 73 SQ51_contig_83, whole genome shotgun sequence (1919 bp)
Overview 1 RT 1: 62-1918 bp Neighborhood of RT #1 [62, 1918] RVT-GII Feature: gene Location: 62-1549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 467-1157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 67-1157 bp Feature: gene Location: 1703-1918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VTZO01000009.1 Pseudocitrobacter sp. 73 SQ51_contig_9, whole genome shotgun sequence (476869 bp)
Overview 1 RT 1: 348359-352337 bp Neighborhood of RT #1 [348359, 352337] RVT-Retrons Feature: gene Location: 348359-348916 bp Feature: gene Location: 348942-349298 bp Feature: gene Location: 349337-350266 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 349493-350042 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 349493-35 0042 bp Feature: gene Location: 350575-351453 bp Feature: gene Location: 351909-352337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons