myRT

myRT report for GCA_008370215.1_ASM837021v1

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Seq: SEUJ01000019.1 Pseudoalteromonas fuliginea strain PS47 467, whole genome shotgun sequence (2606 bp)
Overview 1 RT 1: 3-2389 bp Neighborhood of RT #1 [3, 2469] DEDD_Tnp_IS110 RVT-GII GIIM Feature: gene Location: 3-293 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 42-294 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 42-294 bp Feature: gene Location: 688-1005 bp Feature: gene Location: 1180-2469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1435-2104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 435-21 04 bp Feature: domain Description: GIIM Note: maturase Location: 2197-2389 bp Feature: domain Description: GIIM Note: maturase Location: 21 97-2389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), RVT-GII, GIIM (pfam08388)

Seq: SEUJ01000027.1 Pseudoalteromonas fuliginea strain PS47 491, whole genome shotgun sequence (4002 bp)
Overview 1 RT 1: 138-3792 bp Neighborhood of RT #1 [138, 3971] RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 138-1427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-1062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-1062 bp Feature: domain Description: GIIM Note: maturase Location: 1155-1347 bp Feature: domain Description: GIIM Note: maturase Location: 1155-1347 bp Feature: gene Location: 1602-1919 bp Feature: gene Location: 2616-3971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2910-3534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 910-3534 bp Feature: domain Description: GIIM Note: maturase Location: 3573-3792 bp Feature: domain Description: GIIM Note: maturase Location: 3573-3792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SEUJ01000020.1 Pseudoalteromonas fuliginea strain PS47 492, whole genome shotgun sequence (2644 bp)
Overview 1 RT 1: 138-2632 bp Neighborhood of RT #1 [138, 2632] RVT-GII GIIM Feature: gene Location: 138-1427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-1062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 93 -1062 bp Feature: domain Description: GIIM Note: maturase Location: 1155-1347 bp Feature: domain Description: GIIM Note: maturase Location: 1155-13 47 bp Feature: gene Location: 1602-1919 bp Feature: gene Location: 2027-2632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SEUJ01000052.1 Pseudoalteromonas fuliginea strain PS47 531, whole genome shotgun sequence (64101 bp)
Overview 1 RT 1: 59255-64035 bp Neighborhood of RT #1 [59255, 64100] GcvR bcp RVT-Retrons COG3547 Feature: gene Location: 59255-59788 bp Feature: domain Description: GcvR Location: 59270-59774 bp Feature: domain Description: GcvR Location: 59270-59774 bp Feature: gene Location: 59791-60279 bp Feature: domain Description: bcp Location: 59815-60271 bp Feature: domain Description: bcp Location: 59815-60271 bp Feature: gene Location: 60478-62334 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60613-61339 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60613-61339 bp Feature: gene Location: 62976-64100 bp Feature: domain Description: COG3547 Location: 63084-64035 bp Feature: domain Description: COG354 7 Location: 63084 -64 035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GcvR (COG2716), bcp (PRK09437), RVT-Retrons, COG3547 (Transposase )

Seq: SEUJ01000035.1 Pseudoalteromonas fuliginea strain PS47 538, whole genome shotgun sequence (7029 bp)
Overview 1 RT 1: 1664-7028 bp Neighborhood of RT #1 [1664, 7028] COG3547 DUF772 DDE_Tnp_1_6 RVT-GII GIIM Feature: gene Location: 1664-2818 bp Feature: domain Description: COG3547 Location: 1766-2669 bp Feature: domain Description: COG35 47 Location: 1766-2669 bp Feature: gene Location: 3412-4950 bp Feature: domain Description: DUF772 Location: 3577-3784 bp Feature: domain Description: DUF772 Location: 35 77-3784 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4546-4933 bp Feature: domain Description: DDE_Tnp_1_6 Location: 45 46-4933 bp Feature: gene Location: 5180-6469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5435-6104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 435 -6104 bp Feature: domain Description: GIIM Note: maturase Location: 6197-6389 bp Feature: domain Description: GIIM Note: maturase Location: 6197-6389 bp Feature: gene Location: 6894-7028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DUF772 (pfam05598), DDE_Tnp_1_6 (pfam13751), RVT-GII, GIIM (pfam08388)

Seq: SEUJ01000072.1 Pseudoalteromonas fuliginea strain PS47 550, whole genome shotgun sequence (175916 bp)
Overview 1 RT 1: 21613-25980 bp 2 RT 2: 172829-175915 bp Neighborhood of RT #1 [21613, 25980] RVT-UG28 Neighborhood of RT #2 [172829, 175915] DUF772 RVT-GII GIIM Feature: gene Location: 21613-22200 bp Feature: gene Location: 22711-22875 bp Feature: gene Location: 22917-24422 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 23205-23841 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 23205-23841 bp Feature: gene Location: 24634-25332 bp Feature: gene Location: 25345-25980 bp Feature: gene Location: 172829-173407 bp Feature: gene Location: 173595-173837 bp Feature: domain Description: DUF772 Location: 173760-173835 bp Feature: domain Description: DUF772 Location: 17376 0-173835 bp Feature: gene Location: 174067-175356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174322-174991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174322-174991 bp Feature: domain Description: GIIM Note: maturase Location: 175084-175276 bp Feature: domain Description: GIIM Note: maturase Location: 175084-175276 bp Feature: gene Location: 175781-175915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28, DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)