myRT

myRT report for GCA_008370245.1_ASM837024v1

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Seq: SEUL01000049.1 Pseudoalteromonas fuliginea strain PS2 527, whole genome shotgun sequence (64101 bp)
Overview 1 RT 1: 59255-63945 bp Neighborhood of RT #1 [59255, 64010] GcvR bcp RVT-Retrons COG3547 Feature: gene Location: 59255-59788 bp Ori: KAA1169009.1 Feature: domain Description: GcvR Location: 59270-59774 bp Feature: domain Description: GcvR Location: 59270-59774 bp Feature: gene Location: 59800-60279 bp Ori: KAA1169010.1 Feature: domain Description: bcp Location: 59815-60271 bp Feature: domain Description: bcp Location: 5981 5-60271 bp Feature: gene Location: 60478-62334 bp Ori: KAA1169011.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 60613-61339 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6061 3-61 339 bp Feature: gene Location: 62976-64010 bp Ori: KAA1169012.1 Feature: domain Description: COG3547 Location: 62994-63945 bp Feature: domain Description: COG3547 Location: 62994-63945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GcvR (COG2716), bcp (PRK09437), RVT-Retrons, COG3547 (Transposase )

Seq: SEUL01000017.1 Pseudoalteromonas fuliginea strain PS2 490, whole genome shotgun sequence (2606 bp)
Overview 1 RT 1: 138-2605 bp Neighborhood of RT #1 [138, 2606] RVT-GII GIIM DEDD_Tnp_IS110 Feature: gene Location: 138-1427 bp Ori: KAA1170204.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-1062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-1062 bp Feature: domain Description: GIIM Note: maturase Location: 1155-1347 bp Feature: domain Description: GIIM Note: maturase Location: 1155-1347 bp Feature: gene Location: 2314-2606 bp Ori: KAA1170205.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 2353-2605 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2 353-2 605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548)

Seq: SEUL01000027.1 Pseudoalteromonas fuliginea strain PS2 491, whole genome shotgun sequence (5083 bp)
Overview 1 RT 1: 561-3685 bp Neighborhood of RT #1 [561, 3685] RVT-GII GIIM DUF772 DDE_Tnp_1_6 Feature: gene Location: 561-1850 bp Ori: KAA1170032.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 816-1485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 816-1485 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1770 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1770 bp Feature: gene Location: 2080-3618 bp Ori: KAA1170033.1 Feature: domain Description: DUF772 Location: 2245-2452 bp Feature: domain Description: DUF772 Location: 2245-2452 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3214-3601 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3 214-3 601 bp Feature: gene Location: 3500-3685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF772 (pfam05598), DDE_Tnp_1_6 (pfam13751)

Seq: SEUL01000025.1 Pseudoalteromonas fuliginea strain PS2 488, whole genome shotgun sequence (4002 bp)
Overview 1 RT 1: 138-3792 bp Neighborhood of RT #1 [138, 3971] RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 138-1427 bp Ori: KAA1170087.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-1062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-1062 bp Feature: domain Description: GIIM Note: maturase Location: 1155-1347 bp Feature: domain Description: GIIM Note: maturase Location: 1155-134 7 bp Feature: gene Location: 2718-3971 bp Ori: KAA1170088.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2910-3534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2910-3534 bp Feature: domain Description: GIIM Note: maturase Location: 3573-3792 bp Feature: domain Description: GIIM Note: maturase Location: 3573-3792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SEUL01000024.1 Pseudoalteromonas fuliginea strain PS2 489, whole genome shotgun sequence (3663 bp)
Overview 1 RT 1: 138-3660 bp Neighborhood of RT #1 [138, 3663] RVT-GII GIIM YhhI YhhI YhhI Feature: gene Location: 138-1427 bp Ori: KAA1170089.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-1062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-1062 bp Feature: domain Description: GIIM Note: maturase Location: 1155-1347 bp Feature: domain Description: GIIM Note: maturase Location: 115 5 -1347 bp Feature: gene Location: 2027-2617 bp Feature: gene Location: 2589-3663 bp Ori: KAA1170091.1 Feature: domain Description: YhhI Location: 2658-2916 bp Feature: domain Description: YhhI Location: 265 8-2916 bp Feature: domain Description: YhhI Location: 3054-3258 bp Feature: domain Description: YhhI Location: 305 4-325 8 bp Feature: domain Description: YhhI Location: 3441-3660 bp Feature: domain Description: YhhI Location: 3441-3660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YhhI (COG5433)

Seq: SEUL01000069.1 Pseudoalteromonas fuliginea strain PS2 547, whole genome shotgun sequence (175906 bp)
Overview 1 RT 1: 20918-25980 bp 2 RT 2: 172819-175266 bp Neighborhood of RT #1 [20918, 25980] AHH RVT-UG28 Neighborhood of RT #2 [172819, 175346] DUF772 RVT-GII GIIM Feature: gene Location: 20918-21616 bp Ori: KAA1166859.1 Feature: domain Description: AHH Location: 21227-21512 bp Feature: domain Description: AHH Location: 21227-21512 bp Feature: gene Location: 21613-22200 bp Feature: gene Location: 22917-24422 bp Ori: KAA1166861.1 Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 23205-23841 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 23205-23841 bp Feature: gene Location: 24634-25332 bp Feature: gene Location: 25345-25980 bp Feature: gene Location: 172819-173397 bp Feature: gene Location: 173585-173827 bp Ori: KAA1166978.1 Feature: domain Description: DUF772 Location: 173750-173825 bp Feature: domain Description: DUF772 Location: 173750-173825 bp Feature: gene Location: 174057-175346 bp Ori: KAA1166979.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174312-174981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174312-174981 bp Feature: domain Description: GIIM Note: maturase Location: 175074-175266 bp Feature: domain Description: GIIM Note: maturase Location: 175074-17526 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AHH (pfam14412), RVT-UG28, DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)