myRT

myRT report for GCA_008373295.1_ASM837329v1

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Seq: VUDN01000020.1 Escherichia coli strain EcFF373 NODE_20_length_80896_cov_48.9194, whole genome shotgun sequence (80896 bp)
Overview 1 RT 1: 53892-60267 bp Neighborhood of RT #1 [53892, 60290] Psu PRK09678 RVT-UG3 RVT-UG8 PBP2_CrgA_like_5 XdhC Feature: gene Location: 53892-54443 bp Feature: domain Description: Psu Location: 53913-54423 bp Feature: domain Description: Psu Location: 5391 3-54423 bp Feature: gene Location: 54449-54721 bp Feature: domain Description: PRK09678 Location: 54458-54623 bp Feature: domain Description: PRK09678 Location: 54458-54623 bp Feature: gene Location: 55116-56393 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 55404-55899 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 55404-55899 bp Feature: gene Location: 56384-58402 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 56957-57410 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 56957-5741 0 bp Feature: gene Location: 58945-59355 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 59017-59329 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 5901 7-59329 bp Feature: gene Location: 59334-60290 bp Feature: domain Description: XdhC Location: 59412-60267 bp Feature: domain Description: XdhC Location: 5941 2-60267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG3, RVT-UG8, PBP2_CrgA_like_5 (cd08474), XdhC (COG1975)

Seq: VUDN01000038.1 Escherichia coli strain EcFF373 NODE_38_length_29789_cov_51.774, whole genome shotgun sequence (29789 bp)
Overview 1 RT 1: 11123-14829 bp Neighborhood of RT #1 [11123, 14834] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 11123-11254 bp Feature: gene Location: 11652-11849 bp Feature: gene Location: 12018-12452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12210-12426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 10-12 42 6 bp Feature: gene Location: 12425-13078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12428-12836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 42 8-12 836 bp Feature: domain Description: GIIM Note: maturase Location: 12884-13076 bp Feature: domain Description: GIIM Note: maturase Location: 12 884-13076 bp Feature: gene Location: 13454-13672 bp Feature: gene Location: 13803-14834 bp Feature: domain Description: LacI Location: 13845-13980 bp Feature: domain Description: LacI Location: 13845-13980 bp Feature: domain Description: PBP1_GntR Location: 14019-14829 bp Feature: domain Description: PBP1_GntR Location: 14019-1482 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)