myRT

myRT report for GCA_008373495.1_ASM837349v1

Download annotations/find similar RTs

Seq: VUDW01000014.1 Escherichia coli strain EcFF041 NODE_14_length_91665_cov_54.979, whole genome shotgun sequence (91665 bp)
Overview 1 RT 1: 601-3893 bp Neighborhood of RT #1 [601, 4066] InsE PHA02517 RVT-GII HTH_LacI PBP1_RegR_EndR_KdgR_like AP_endonuc_2 Feature: gene Location: 601-927 bp Feature: domain Description: InsE Location: 604-925 bp Feature: domain Description: InsE Location: 604-925 bp Feature: gene Location: 927-1712 bp Feature: domain Description: PHA02517 Location: 987-1689 bp Feature: domain Description: PHA0251 7 Location: 987-1 689 bp Feature: gene Location: 1754-1981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1760-1895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 760-1 895 bp Feature: gene Location: 2201-3217 bp Feature: domain Description: HTH_LacI Location: 2234-2387 bp Feature: domain Description: HTH_LacI Location: 2234-2387 bp Feature: domain Description: PBP1_RegR_EndR_KdgR_like Location: 2402-3200 bp Feature: domain Description: PBP1 _RegR_EndR_KdgR_like Location: 2402-3200 bp Feature: gene Location: 3317-4066 bp Feature: domain Description: AP_endonuc_2 Location: 3656-3893 bp Feature: domain Description: AP_endonuc_2 Location: 3656-3893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_LacI (cd01392), PBP1_RegR_EndR_KdgR_like, AP_endonuc_2 (pfam01261), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)

Seq: VUDW01000001.1 Escherichia coli strain EcFF041 NODE_1_length_309089_cov_44.0994, whole genome shotgun sequence (309089 bp)
Overview 1 RT 1: 225364-231134 bp Neighborhood of RT #1 [225364, 231134] P Q RVT-Retrons Feature: gene Location: 225364-227130 bp Feature: domain Description: P Location: 225391-227125 bp Feature: domain Description: P Location: 2 2 5391-2 2 712 5 bp Feature: gene Location: 227130-228161 bp Feature: domain Description: Q Location: 227139-228156 bp Feature: domain Description: Q Location: 2 2 7139-2 2 8156 bp Feature: gene Location: 228211-229968 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 228355-228976 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 2 8355-2 2 8976 bp Feature: gene Location: 230199-230342 bp Feature: gene Location: 230352-231134 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P (PHA02535), Q (PHA02536), RVT-Retrons

Seq: VUDW01000003.1 Escherichia coli strain EcFF041 NODE_3_length_195753_cov_39.8727, whole genome shotgun sequence (195753 bp)
Overview 1 RT 1: 111675-115278 bp Neighborhood of RT #1 [111675, 115278] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 111675-111959 bp Feature: domain Description: InsE Location: 111687-111948 bp Feature: domain Description: InsE Location: 111687-111948 bp Feature: gene Location: 112001-112426 bp Feature: domain Description: PHA02517 Location: 112022-112361 bp Feature: domain Description: PHA02517 Location: 112022-1123 61 bp Feature: gene Location: 113018-114541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113291-114023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113 291-114023 bp Feature: domain Description: GIIM Note: maturase Location: 114098-114296 bp Feature: domain Description: GIIM Note: maturase Location: 114098-114296 bp Feature: gene Location: 114664-115080 bp Feature: domain Description: PHA02517 Location: 114667-115072 bp Feature: domain Description: PHA02517 Location: 114667-115072 bp Feature: gene Location: 115108-115278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)