myRT

myRT report for GCA_008374075.1_ASM837407v1

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Seq: VRLW01000001.1 Rubripirellula obstinata strain LF1 LF1_contig00001, whole genome shotgun sequence (6586311 bp)
Overview 1 RT 1: 1316235-1322516 bp 2 RT 2: 2393066-2400432 bp 3 RT 3: 2813107-2819636 bp 4 RT 4: 3035324-3042161 bp 5 RT 5: 4090917-4097087 bp 6 RT 6: 6484800-6493341 bp Neighborhood of RT #1 [1316235, 1322743] Phage_int_SAM_1 INT_C_like_6 RVT-UG21 COG0610 COG0610 Neighborhood of RT #2 [2393066, 2400432] Peptidase_C15 rho RVT-GII GIIM AHBA_syn Neighborhood of RT #3 [2813107, 2819677] PLN02653 UDP_AE_SDR_e RVT-GII GIIM COG3666 DDE_Tnp_1_6 Neighborhood of RT #4 [3035324, 3042166] LolE LolE ABC_MJ0796_LolCDE_FtsE RVT-GII GIIM PRK05678 sucC Neighborhood of RT #5 [4090917, 4097095] PRK09282 PRK09282 RVT-GII GIIM ExbD ExbD Neighborhood of RT #6 [6484800, 6493346] EstA CsrA RVT-GII GIIM COG3666 DDE_Tnp_1_6 RarD Feature: gene Location: 1316235-1316456 bp Feature: gene Location: 1316663-1317661 bp Ori: KAA1258586.1 Gene: xerC_2 Feature: domain Description: Phage_int_SAM_1 Location: 1316819-1317011 bp Feature: domain Description: Phage_int_SAM_1 Location: 1 31 681 9-1 31 701 1 bp Feature: domain Description: INT_C_like_6 Location: 1317107-1317644 bp Feature: domain Description: INT_C_like_6 Location: 1 31 71 07-1 31 7644 bp Feature: gene Location: 1317664-1318974 bp Ori: KAA1258587.1 Feature: RT Description: RVT-UG21 Note: UG21 RT Location: 1317790-1318198 bp Feature: RT Description: RVT-UG21 Note: UG21 RT Location: 1 31 7790-1 31 81 98 bp Feature: gene Location: 1319073-1319378 bp Feature: gene Location: 1319318-1322743 bp Ori: KAA1258589.1 Gene: hsdR_1 Feature: domain Description: COG0610 Location: 1319348-1320194 bp Feature: domain Description: COG061 0 Location: 1 31 9348-1 3201 94 bp Feature: domain Description: COG0610 Location: 1320380-1322516 bp Feature: domain Description: COG061 0 Location: 1 320380-1 32251 6 bp Feature: gene Location: 2393066-2393650 bp Ori: KAA1259451.1 Gene: pcp Feature: domain Description: Peptidase_C15 Location: 2393075-2393603 bp Feature: domain Description: Peptidase_C1 5 Location: 2393075-2393603 bp Feature: gene Location: 2394659-2396011 bp Ori: KAA1259452.1 Feature: domain Description: rho Location: 2394887-2395988 bp Feature: domain Description: rho Location: 2394887-2395988 bp Feature: gene Location: 2397417-2398607 bp Ori: KAA1259453.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2397639-2398260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2397639-2398260 bp Feature: domain Description: GIIM Note: maturase Location: 2398308-2398536 bp Feature: domain Description: GIIM Note: maturase Location: 2398308-2398536 bp Feature: gene Location: 2399043-2400137 bp Ori: KAA1259454.1 Gene: wbpE_1 Feature: domain Description: AHBA_syn Location: 2399097-2400108 bp Feature: domain Description: AHBA_syn Location: 2399097-24001 08 bp Feature: gene Location: 2400250-2400432 bp Feature: gene Location: 2813107-2814090 bp Ori: KAA1259793.1 Gene: gmd_2 Feature: domain Description: PLN02653 Location: 2813116-2814082 bp Feature: domain Description: PLN02653 Location: 281 31 1 6-281 4082 bp Feature: gene Location: 2814437-2815435 bp Ori: KAA1259794.1 Feature: domain Description: UDP_AE_SDR_e Location: 2814485-2815406 bp Feature: domain Description: UDP_AE_SDR_e Location: 281 4485-281 5406 bp Feature: gene Location: 2816352-2817542 bp Ori: KAA1259795.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2816574-2817195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 6574-281 71 95 bp Feature: domain Description: GIIM Note: maturase Location: 2817243-2817471 bp Feature: domain Description: GIIM Note: maturase Location: 281 7243-281 7471 bp Feature: gene Location: 2817710-2818060 bp Feature: gene Location: 2818145-2819677 bp Ori: KAA1259797.1 Feature: domain Description: COG3666 Location: 2818181-2818595 bp Feature: domain Description: COG3666 Location: 281 81 81 -281 8595 bp Feature: domain Description: DDE_Tnp_1_6 Location: 2819273-2819636 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 281 9273-281 9636 bp Feature: gene Location: 3035324-3036865 bp Ori: KAA1259930.1 Gene: lolE Feature: domain Description: LolE Location: 3035330-3035735 bp Feature: domain Description: LolE Location: 3035330-3035735 bp Feature: domain Description: LolE Location: 3036083-3036863 bp Feature: domain Description: LolE Location: 3036083-3036863 bp Feature: gene Location: 3036993-3037715 bp Ori: KAA1259931.1 Feature: domain Description: ABC_MJ0796_LolCDE_FtsE Location: 3037017-3037683 bp Feature: domain Description: ABC_MJ0796_LolCDE_FtsE Location: 303701 7-3037683 bp Feature: gene Location: 3038570-3039760 bp Ori: KAA1259932.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3038792-3039413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3038792-303941 3 bp Feature: domain Description: GIIM Note: maturase Location: 3039461-3039689 bp Feature: domain Description: GIIM Note: maturase Location: 3039461 -3039689 bp Feature: gene Location: 3039985-3040860 bp Ori: KAA1259933.1 Gene: sucD_1 Feature: domain Description: PRK05678 Location: 3039988-3040852 bp Feature: domain Description: PRK05678 Location: 3039988-3040852 bp Feature: gene Location: 3040982-3042166 bp Ori: KAA1259934.1 Gene: sucC Feature: domain Description: sucC Location: 3040985-3042161 bp Feature: domain Description: sucC Location: 3040985-30421 61 bp Feature: gene Location: 4090917-4091219 bp Feature: gene Location: 4091358-4092887 bp Ori: KAA1260749.1 Feature: domain Description: PRK09282 Location: 4091385-4092243 bp Feature: domain Description: PRK09282 Location: 4091 385-4092243 bp Feature: domain Description: PRK09282 Location: 4092345-4092873 bp Feature: domain Description: PRK09282 Location: 4092345-4092873 bp Feature: gene Location: 4094468-4095658 bp Ori: KAA1260750.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4094690-4095311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4094690-409531 1 bp Feature: domain Description: GIIM Note: maturase Location: 4095359-4095587 bp Feature: domain Description: GIIM Note: maturase Location: 4095359-4095587 bp Feature: gene Location: 4096272-4096664 bp Ori: KAA1260751.1 Feature: domain Description: ExbD Location: 4096275-4096635 bp Feature: domain Description: ExbD Location: 4096275-4096635 bp Feature: gene Location: 4096661-4097095 bp Ori: KAA1260752.1 Feature: domain Description: ExbD Location: 4096691-4097087 bp Feature: domain Description: ExbD Location: 4096691 -4097087 bp Feature: gene Location: 6484800-6486926 bp Ori: KAA1262537.1 Feature: domain Description: EstA Location: 6486093-6486360 bp Feature: domain Description: EstA Location: 6486093-6486360 bp Feature: gene Location: 6486928-6487338 bp Ori: KAA1262538.1 Feature: domain Description: CsrA Location: 6486931-6487069 bp Feature: domain Description: CsrA Location: 6486931 -6487069 bp Feature: gene Location: 6487982-6489172 bp Ori: KAA1262539.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6488204-6488825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6488204-6488825 bp Feature: domain Description: GIIM Note: maturase Location: 6488873-6489101 bp Feature: domain Description: GIIM Note: maturase Location: 6488873-64891 01 bp Feature: gene Location: 6490571-6492103 bp Ori: KAA1262540.1 Feature: domain Description: COG3666 Location: 6490607-6491021 bp Feature: domain Description: COG3666 Location: 6490607-6491 021 bp Feature: domain Description: DDE_Tnp_1_6 Location: 6491699-6492062 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 6491 699-6492062 bp Feature: gene Location: 6492378-6493346 bp Ori: KAA1262541.1 Feature: domain Description: RarD Location: 6492432-6493341 bp Feature: domain Description: RarD Location: 6492432-6493341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_C_like_6 (cd01196), RVT-UG21, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), Peptidase_C15 (pfam01470), rho (TIGR00767), RVT-GII, GIIM (pfam08388), AHBA_syn (cd00616), PLN02653 (GDP-mannose 4,6-dehydratase)
UDP_AE_SDR_e (cd05256), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), LolE (COG4591), ABC_MJ0796_LolCDE_FtsE (cd03255), PRK05678 (succinyl-CoA synthetase subunit alpha; Validated), sucC (PRK00696), PRK09282 (pyruvate carboxylase subunit B; Validated), ExbD (pfam02472), EstA (COG1075)
CsrA (pfam02599), RarD (COG2962)