myRT

myRT report for GCA_008374565.1_ASM837456v1

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Seq: VUCB01000015.1 Klebsiella pneumoniae strain 185I2 contig_00015, whole genome shotgun sequence (111672 bp)
Overview 1 RT 1: 18486-25339 bp Neighborhood of RT #1 [18486, 25356] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 18486-19151 bp Feature: domain Description: INT_P4_C Location: 18591-19149 bp Feature: domain Description: INT_P4_C Location: 1 8591 -1 91 49 bp Feature: gene Location: 19412-19852 bp Feature: domain Description: Integrase_1 Location: 19418-19634 bp Feature: domain Description: Integrase_1 Location: 1 941 8-1 9634 bp Feature: gene Location: 19909-21987 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 20317-20761 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2031 7-20761 bp Feature: gene Location: 21987-24596 bp Feature: domain Description: FimD Location: 22044-24585 bp Feature: domain Description: FimD Location: 22044-24585 bp Feature: gene Location: 24628-25356 bp Feature: domain Description: FimC Location: 24676-25339 bp Feature: domain Description: FimC Location: 24676-25339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: VUCB01000035.1 Klebsiella pneumoniae strain 185I2 contig_00035, whole genome shotgun sequence (50626 bp)
Overview 1 RT 1: 21972-25010 bp Neighborhood of RT #1 [21972, 25010] PRK09678 RVT-UG11 SmpB Feature: gene Location: 21972-22190 bp Feature: domain Description: PRK09678 Location: 21975-22173 bp Feature: domain Description: PRK09678 Location: 2 1975-2 2 173 bp Feature: gene Location: 22437-22625 bp Feature: gene Location: 23068-23367 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 23071-23182 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 3071-2 3182 bp Feature: gene Location: 23983-24465 bp Feature: domain Description: SmpB Location: 24013-24457 bp Feature: domain Description: SmpB Location: 2 4013-2 4457 bp Feature: gene Location: 24597-25010 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668)

Seq: VUCB01000074.1 Klebsiella pneumoniae strain 185I2 contig_00074, whole genome shotgun sequence (14075 bp)
Overview 1 RT 1: 4704-7998 bp Neighborhood of RT #1 [4704, 8012] RVT-GII PRK10276 Feature: gene Location: 4704-4919 bp Feature: gene Location: 5186-5416 bp Feature: gene Location: 5650-7185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6055-6793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6055-6793 bp Feature: gene Location: 7236-7469 bp Feature: gene Location: 7587-8012 bp Feature: domain Description: PRK10276 Location: 7590-7998 bp Feature: domain Description: PRK10276 Location: 7590-7998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: VUCB01000106.1 Klebsiella pneumoniae strain 185I2 contig_00106, whole genome shotgun sequence (3098 bp)
Overview 1 RT 1: 1-2700 bp Neighborhood of RT #1 [1, 2765] RVT-GII GIIM PHA02517 Feature: gene Location: 1-138 bp Feature: gene Location: 225-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 98-1230 bp Feature: domain Description: GIIM Note: maturase Location: 1305-1503 bp Feature: domain Description: GIIM Note: maturase Location: 1305-1503 bp Feature: gene Location: 1702-2127 bp Feature: gene Location: 2340-2765 bp Feature: domain Description: PHA02517 Location: 2364-2700 bp Feature: domain Description: PHA02517 Location: 2364 -2700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)