myRT

myRT report for GCA_008374875.1_ASM837487v1

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Seq: VUCL01000010.1 Klebsiella pneumoniae strain 178A6 contig_0010, whole genome shotgun sequence (203614 bp)
Overview 1 RT 1: 127662-134506 bp Neighborhood of RT #1 [127662, 134763] AAA_15 RVT-Retrons Nuc_deoxyrib_tr HTH_23 Feature: gene Location: 127662-127967 bp Feature: gene Location: 128850-131126 bp Feature: domain Description: AAA_15 Location: 128883-129891 bp Feature: domain Description: AAA_1 5 Location: 1 28883-1 29891 bp Feature: gene Location: 131241-132341 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 131421-131955 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 31 421 -1 31 955 bp Feature: gene Location: 132997-133866 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 133519-133690 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1 3351 9-1 33690 bp Feature: gene Location: 134287-134763 bp Feature: domain Description: HTH_23 Location: 134365-134506 bp Feature: domain Description: HTH_23 Location: 1 34365-1 34506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014), HTH_23 (pfam13384)

Seq: VUCL01000028.1 Klebsiella pneumoniae strain 178A6 contig_0028, whole genome shotgun sequence (65764 bp)
Overview 1 RT 1: 25701-29834 bp Neighborhood of RT #1 [25701, 29848] SmpB RVT-UG11 PRK09678 D Feature: gene Location: 25701-26033 bp Feature: gene Location: 26165-26647 bp Feature: domain Description: SmpB Location: 26195-26639 bp Feature: domain Description: SmpB Location: 2 6195-2 6639 bp Feature: gene Location: 27262-28035 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 27397-27850 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 7397-2 7850 bp Feature: gene Location: 28439-28657 bp Feature: domain Description: PRK09678 Location: 28442-28640 bp Feature: domain Description: PRK09678 Location: 2 8442 -2 8640 bp Feature: gene Location: 28748-29848 bp Feature: domain Description: D Location: 28754-29834 bp Feature: domain Description: D Location: 2 8754-2 9834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)

Seq: VUCL01000048.1 Klebsiella pneumoniae strain 178A6 contig_0048, whole genome shotgun sequence (11387 bp)
Overview 1 RT 1: 10353-11226 bp Neighborhood of RT #1 [10353, 11384] PRK10173 PRK10173 RVT-GII Feature: gene Location: 10353-10802 bp Feature: domain Description: PRK10173 Location: 10356-10794 bp Feature: domain Description: PRK10173 Location: 103 56-10794 bp Feature: gene Location: 10786-11097 bp Feature: domain Description: PRK10173 Location: 10789-11008 bp Feature: domain Description: PRK10173 Location: 10789-11008 bp Feature: gene Location: 11136-11384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11154-11226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11154-11226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII

Seq: VUCL01000055.1 Klebsiella pneumoniae strain 178A6 contig_0055, whole genome shotgun sequence (9371 bp)
Overview 1 RT 1: 7194-9123 bp Neighborhood of RT #1 [7194, 9368] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 7194-7598 bp Feature: domain Description: InsE Location: 7224-7560 bp Feature: domain Description: InsE Location: 7224 -7560 bp Feature: gene Location: 7627-7983 bp Feature: domain Description: PHA02517 Location: 7630-7939 bp Feature: domain Description: PHA02517 Location: 7630-7939 bp Feature: gene Location: 8100-9368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8118-8850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8118-8850 bp Feature: domain Description: GIIM Note: maturase Location: 8925-9123 bp Feature: domain Description: GIIM Note: maturase Location: 8925-9123 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: VUCL01000071.1 Klebsiella pneumoniae strain 178A6 contig_0071, whole genome shotgun sequence (1894 bp)
Overview 1 RT 1: 347-1442 bp Neighborhood of RT #1 [347, 1834] RVT-GII Feature: gene Location: 347-1834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75 2-1442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VUCL01000072.1 Klebsiella pneumoniae strain 178A6 contig_0072, whole genome shotgun sequence (1632 bp)
Overview 1 RT 1: 3-1628 bp Neighborhood of RT #1 [3, 1630] RVT-GII InsE Feature: gene Location: 3-329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276-330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276 -330 bp Feature: gene Location: 960-1178 bp Feature: gene Location: 1400-1630 bp Feature: domain Description: InsE Location: 1403-1628 bp Feature: domain Description: InsE Location: 1403-16 28 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963)