myRT

myRT report for GCA_008385615.1_ASM838561v1

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Seq: REBG01000017.1 Escherichia coli strain EC249a_ST127H scaffold_16, whole genome shotgun sequence (98384 bp)
Overview 1 RT 1: 95460-97640 bp Neighborhood of RT #1 [95460, 98293] HTH_29 HTH_33 DDE_3 RVT-AbiP2 Feature: gene Location: 95460-95750 bp Feature: gene Location: 95760-96821 bp Feature: domain Description: HTH_29 Location: 95880-96051 bp Feature: domain Description: HTH_29 Location: 95880-96051 bp Feature: domain Description: HTH_33 Location: 96084-96246 bp Feature: domain Description: HTH_33 Location: 96084-96246 bp Feature: domain Description: DDE_3 Location: 96288-96717 bp Feature: domain Description: DDE_3 Location: 96288-9671 7 bp Feature: gene Location: 96923-98293 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 97184-97640 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 971 84-97640 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), RVT-AbiP2

Seq: REBG01000058.1 Escherichia coli strain EC249a_ST127H scaffold_57, whole genome shotgun sequence (9699 bp)
Overview 1 RT 1: 588-4348 bp Neighborhood of RT #1 [588, 4413] COG3547 PHA02517 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 588-1091 bp Feature: domain Description: COG3547 Location: 615-1032 bp Feature: domain Description: COG3547 Location: 615-1032 bp Feature: gene Location: 1565-1900 bp Feature: domain Description: PHA02517 Location: 1568-1697 bp Feature: domain Description: PHA02 517 Location: 1568-1697 bp Feature: domain Description: PHA02517 Location: 1703-1898 bp Feature: domain Description: PHA02 517 Location: 1703-1898 bp Feature: gene Location: 2017-3540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2290-3022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 90-302 2 bp Feature: domain Description: GIIM Note: maturase Location: 3097-3295 bp Feature: domain Description: GIIM Note: maturase Location: 3097-32 95 bp Feature: gene Location: 3494-3919 bp Feature: gene Location: 4132-4413 bp Feature: domain Description: PHA02517 Location: 4138-4348 bp Feature: domain Description: PHA02 517 Location: 4138-4348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)