myRT

myRT report for GCA_008385645.1_ASM838564v1

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Seq: REBH01000015.1 Escherichia coli strain EC231_ST38C scaffold_14, whole genome shotgun sequence (110852 bp)
Overview 1 RT 1: 22254-28497 bp Neighborhood of RT #1 [22254, 28634] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22254-22520 bp Feature: domain Description: Phage_integrase Location: 22320-22416 bp Feature: domain Description: Phage_integrase Location: 22320-2241 6 bp Feature: gene Location: 22603-23073 bp Feature: gene Location: 23420-26629 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23948-24437 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23948-24437 bp Feature: domain Description: nitrilase Location: 25943-26540 bp Feature: domain Description: nitrilase Location: 25943-26540 bp Feature: gene Location: 26924-27727 bp Feature: domain Description: AbiEi_3_N Location: 26957-27218 bp Feature: domain Description: AbiEi_3_N Location: 26957-2721 8 bp Feature: domain Description: AbiEi_3 Location: 27230-27686 bp Feature: domain Description: AbiEi_3 Location: 27230-27686 bp Feature: gene Location: 27714-28634 bp Feature: domain Description: AbiEii Location: 27756-28497 bp Feature: domain Description: AbiEii Location: 27756-28497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: REBH01000027.1 Escherichia coli strain EC231_ST38C scaffold_26, whole genome shotgun sequence (53210 bp)
Overview 1 RT 1: 24667-27689 bp Neighborhood of RT #1 [24667, 27689] RVT-GII RVT-GII GIIM Feature: gene Location: 24667-25572 bp Feature: gene Location: 25830-26027 bp Feature: gene Location: 26058-26597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26388-26466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6388-2 6466 bp Feature: gene Location: 26625-27146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26631-26913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6631-2 6913 bp Feature: domain Description: GIIM Note: maturase Location: 26961-27141 bp Feature: domain Description: GIIM Note: maturase Location: 2 6961-2 7141 bp Feature: gene Location: 27245-27391 bp Feature: gene Location: 27501-27689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: REBH01000050.1 Escherichia coli strain EC231_ST38C scaffold_49, whole genome shotgun sequence (17720 bp)
Overview 1 RT 1: 1-2921 bp Neighborhood of RT #1 [1, 3088] RVT-GII GIIM PHA02517 COG2085 Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Feature: gene Location: 2333-2509 bp Feature: domain Description: PHA02517 Location: 2336-2438 bp Feature: domain Description: PHA02517 Location: 23 3 6-243 8 bp Feature: gene Location: 2675-3088 bp Feature: domain Description: COG2085 Location: 2774-2921 bp Feature: domain Description: COG2085 Location: 2774-2921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG2085 (Predicted dinucleotide-binding enzyme )